View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_25 (Length: 336)
Name: NF1860_low_25
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 126 - 321
Target Start/End: Complemental strand, 26811475 - 26811280
Alignment:
| Q |
126 |
tatgtggttataaatttgaagaattagtctttataattacacacatgaaggtactaaaaatttctatgtagacaaatatttagttttctgtttttcaatt |
225 |
Q |
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| T |
26811475 |
tatgtggttgtaaatttgaagaattagtctttataattacacacatgaaggtactaaaaatttctatgtagacaaatatttagttttctgtttttcaatt |
26811376 |
T |
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| Q |
226 |
aaatgatttaaatttataaattgcacacatgattagaatagtaaatcataaatttaactatcaaacagtttaagatggtggtattttacaagttta |
321 |
Q |
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| T |
26811375 |
aaatcatttaaatttataaattgcacacatgattagaatagtaaatcataaatttaactatcaaacagtttaagatggtggtattttacaagttta |
26811280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 26812354 - 26812223
Alignment:
| Q |
1 |
ctagtaattttttgtataaatactgcactcatacaagaattaatcgaaaaataacttccataaagaaaattactatgcattaaagaaatattttgaggat |
100 |
Q |
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| T |
26812354 |
ctagtaattttttgtataaatactgcactcatacaagaattaatcgaaaaataacttccataaagaaaattactatgcattaaagaaatattttgaggat |
26812255 |
T |
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| Q |
101 |
agttaattgatgagtctaaacaatatatgtgg |
132 |
Q |
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| T |
26812254 |
agttaattgatgagtctaaacaatatatgtgg |
26812223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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