View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_29 (Length: 305)
Name: NF1860_low_29
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 33948282 - 33948586
Alignment:
| Q |
1 |
cgctttgccaacaacttcttcttcagtgctcctaccagcccctctcgtgtttcacctcttttctctgaatcctctcttccttttcatcaagacaccaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33948282 |
cgctttgccaacaacttcttcttcagtgctcctaccagcccctctcgtgtttcacctcttttctctgaatcctctcttccttttcatcaagaaaccaaac |
33948381 |
T |
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| Q |
101 |
tcaacaaccaccataacaactgcagttttggcaacgatgacgattttgagtttgatttcagtggcaacctccaaaaagagtctctttccgccgccgatga |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33948382 |
ccaacaaccaccataacaactacagttttggcaacgatgacgattttgagtttgatttcagtggcaacctccaaaaagagtctctttccgccgccgatga |
33948481 |
T |
|
| Q |
201 |
actctttgacggtggaaagatccgtcccatgaaacccttgccaccaaattctccgagaacccgaaagaaaaaagctgttcatgataatactgagagagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33948482 |
actctttgacggtggaaagatccgtcccatgaaaccgttgccaccaaattctccgagaacccgaaagaaaaaagcggttcatgataatactgagagagat |
33948581 |
T |
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| Q |
301 |
tctaa |
305 |
Q |
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||||| |
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| T |
33948582 |
tctaa |
33948586 |
T |
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