View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_3 (Length: 479)
Name: NF1860_low_3
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 7461003 - 7461333
Alignment:
| Q |
15 |
caaaggtggagaaaacagtgccaacgacatgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaa |
114 |
Q |
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| T |
7461003 |
caaaggtggagaaaacagtgctaacgacatgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaa |
7461102 |
T |
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| Q |
115 |
cttgagtcagagaagaaggataggcttgcaatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaaca |
214 |
Q |
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| T |
7461103 |
cttgagtcagagaagaaggataggcttgcaatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaaca |
7461202 |
T |
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| Q |
215 |
agaaacttgaagaagggtacttaagtcttnnnnnnnttcatgaatccaccattcttgagaagtgtctccttgaaaccaaggt----ctctttcttcctct |
310 |
Q |
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||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7461203 |
agaaacttgaagaagagtacttcagtcttaaaaaaaatcatgaatccaccattcttgagaagtgtctccttgaaaccaaggtatacctctttcttcctct |
7461302 |
T |
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| Q |
311 |
tcttatttaatttattattgcaactagatac |
341 |
Q |
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| T |
7461303 |
tcttatttaatttattattgcaactagatac |
7461333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 7446059 - 7446370
Alignment:
| Q |
15 |
caaaggtggagaaaacagtgccaacgacatgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaa |
114 |
Q |
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| T |
7446059 |
caaaggtggagaaaacagtgctaacgacatgaacaaaaagaggaaattgagtgatgaacaagtgaatattttggaagaaaactttggaaatgaacataaa |
7446158 |
T |
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| Q |
115 |
cttgagtcagagaagaaggataggcttgcaatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaaca |
214 |
Q |
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| T |
7446159 |
cttgagtcagagaagaaggataggcttgcaatggagcttggtttagatccaagacaagttgcagtatggttccagaatcgaagggctaggtggaagaaca |
7446258 |
T |
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| Q |
215 |
agaaacttgaagaagggtacttaagtcttnnnnnnnttcatgaatccaccattcttgagaagtgtctccttgaaaccaaggt----ctctttcttcctct |
310 |
Q |
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| T |
7446259 |
agaaacttgaagaagagtacttcagtcttaaaaaaattcatgaatccaccattcttgagaagtgtcttcttgaaaccaaggtatacctctctcttcctct |
7446358 |
T |
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| Q |
311 |
tcttatttaatt |
322 |
Q |
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|||||||||||| |
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| T |
7446359 |
tcttatttaatt |
7446370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 7461391 - 7461467
Alignment:
| Q |
399 |
cagtggattgaattataatttgacatgaaaattttaatttccaatcatcatttctccaacaatattatattactata |
475 |
Q |
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| T |
7461391 |
cagtggattgaattataatttgacatcaaaattttaatttccaatcatcatttctccaacaatattatattactata |
7461467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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