View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_32 (Length: 288)
Name: NF1860_low_32
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 1260240 - 1259999
Alignment:
| Q |
20 |
aaaattaattgaataatagcctcatacactacattcattctatgtcaatctagtgttcattgttttggttactgtccattcaaatgtaatttaaatcgtt |
119 |
Q |
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| T |
1260240 |
aaaattaattgaataatagcctcatacactacattcattctatgtcaatctagtgttcattgttt-ggttactgtccattcaaatgtaatttaaatcgtt |
1260142 |
T |
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| Q |
120 |
taagatattttttcgatctccaaaggaattattggaagacttttggattatatcgctctttttaaggtgtttaatgacattgtttagaaattatgcatgc |
219 |
Q |
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| T |
1260141 |
taagatattttttcgatctccaaagaaattattggaagacttttggattatatcgctctttttaaggtatttaatgacattgtttagaaattatgcatgc |
1260042 |
T |
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| Q |
220 |
aaattatcaatcacaacatcctttataataaaacaactaagcta |
263 |
Q |
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| T |
1260041 |
aaattatcaatcacaacatcc-ttataataaaacaactaagcta |
1259999 |
T |
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