View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1860_low_40 (Length: 249)
Name: NF1860_low_40
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_40 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 41943014 - 41943248
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41943014 |
aaaattgcaactcaccaattcttataattagcaactacaagaaaaa-taataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
41943112 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagatactctccttcctagccgaataacctctaaattta |
212 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41943113 |
aattcaacaacataa-tctatcattttcatttaaacatggtcaagactagagcctttgccttagatgctctccttcctagccgaataacctctaaattta |
41943211 |
T |
|
| Q |
213 |
tacgcatcattcttcgctccgcaaactcaaatccaat |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41943212 |
tacgcatcattcttcgctccgcaaactcaaatccaat |
41943248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 3295409 - 3295290
Alignment:
| Q |
58 |
aataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaa |
156 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||| |
|
|
| T |
3295409 |
aataataaaacacaataaatcttttctctcatccattaaatcaagaagcatatcaaattcaacatcat-aatctatcagtttcacttaaatcatggtcaa |
3295311 |
T |
|
| Q |
157 |
gactagagcccttaccttaga |
177 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
3295310 |
gactagagctcttaccttaga |
3295290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 10336080 - 10336177
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatc |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336080 |
aaaattgcaactcaccaattcttataatttgcaactacaagaaaa-ataataaaacacactaaatcttttcactcatccattaaatcaagaagcatatc |
10336177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 249
Target Start/End: Original strand, 10344738 - 10344883
Alignment:
| Q |
111 |
caaattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttac--------cttagatactctccttcctagccgaataacc |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
10344738 |
caaattcaacatcataa-tctatcattttcatttaaaaatggtcaagactagaacccttaccttagatgcttagatgctctccttcctaatcgaataacc |
10344836 |
T |
|
| Q |
203 |
tctaaatttatacgcatcattcttcgctccgcaaactcaaatccaat |
249 |
Q |
| |
|
| ||||||||||||||||| ||||||||| || ||||||| |||||| |
|
|
| T |
10344837 |
tttaaatttatacgcatcactcttcgctctgctaactcaactccaat |
10344883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 31519152 - 31519254
Alignment:
| Q |
72 |
ataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagccctta |
170 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| || |||||||||||| ||||| ||||||||||||||||||| ||| |
|
|
| T |
31519152 |
ataaatcttttcactcatctattgagtcaagaagcatatcaaattcaacgtcat-aacctatcattttcaattaaatcatggtcaagactagagccttta |
31519250 |
T |
|
| Q |
171 |
cctt |
174 |
Q |
| |
|
|||| |
|
|
| T |
31519251 |
cctt |
31519254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 9818174 - 9818337
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9818174 |
aaaattgcaactcaccaattcttataattagcaactacaagaaaa-ataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatca |
9818272 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagat |
178 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9818273 |
aattcaacatcat-aatctatcattttcatttaaacatggtcaagactagagcccttaccttagat |
9818337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 21231845 - 21232007
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21231845 |
aaaattggaactcaccaattcatataattatcaactacaagaaaat-taataaaacataataaatcttttcactcatccattaaatcaagaagcatatca |
21231943 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttaccttaga |
177 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
21231944 |
aattcaacatcat-aatctatcattttcatttaaacacggtcaagactagagccattaccttaga |
21232007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 42077468 - 42077625
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42077468 |
aaaattgcaactcaccaattcttataattaacaactacaagaaaa-ataataaaacacaataaatcttttcactcatccattaaatcaagaagcgtatca |
42077566 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttacc |
172 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| |||| |
|
|
| T |
42077567 |
aattcaacatcat-aatctatcattctcatttaaacatggtcaagactagaacccctacc |
42077625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 9881205 - 9881085
Alignment:
| Q |
55 |
aaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatt-taaacatggt |
153 |
Q |
| |
|
|||| |||||||||| | |||||||||||||||||||||| |||| | |||||||||||||| || ||||| ||||||| ||||||||| ||||||| | |
|
|
| T |
9881205 |
aaaattaataaaacatagtaaatcttttcactcatccattgaatcgataagcatatcaaatttaagatcat-aatctattattttcattcaaaacatgat |
9881107 |
T |
|
| Q |
154 |
caagactagagcccttacctta |
175 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
9881106 |
caagactatagcccttacctta |
9881085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 42077624 - 42077680
Alignment:
| Q |
193 |
ccgaataacctctaaatttatacgcatcattcttcgctccgcaaactcaaatccaat |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
42077624 |
ccgaataacctctaaatttatacgcatcattcttcactccgcaaactcaaattcaat |
42077680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 24423320 - 24423220
Alignment:
| Q |
75 |
aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttacct |
173 |
Q |
| |
|
||||| |||||||||||| | ||| |||||||||| |||||||| |||||||| |||||||||||| ||||| ||||||||||||||| | |||||||| |
|
|
| T |
24423320 |
aatctcttcactcatccaatgaat-aagaagcatacaaaattcaatatcataaa-ctatcattttcagttaaatcatggtcaagactagggtccttacct |
24423223 |
T |
|
| Q |
174 |
tag |
176 |
Q |
| |
|
||| |
|
|
| T |
24423222 |
tag |
24423220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 29115604 - 29115651
Alignment:
| Q |
80 |
tttcactcatccattaaatcaagaagcatatcaaattcaacatcataa |
127 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
29115604 |
tttcactcatccatcgaatcatgaagcatatcaaattcaatatcataa |
29115651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 10530137 - 10530300
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10530137 |
aaaattgcaactcaccaattcttataattagcaactacaagaaaa-ataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatca |
10530235 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagat |
178 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10530236 |
aattcaacatcat-aatctatcattttcatttaaacatggtcaagactagagcccttaccttagat |
10530300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 9745282 - 9745123
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||| |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
9745282 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaaa-taataaaacacaataaatattttcactcatccattgaatcaagaagcatatca |
9745184 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttacctt |
174 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9745183 |
aattcaacatcat-aatctatcattttcctttaaacatggtcaagactagagcccttacctt |
9745123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 29587734 - 29587570
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatctttt-cactcatccattaaatcaagaagcatatc |
111 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29587734 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaat-taataaaacataataaatctttttcactcatccattaaatcaagaagcatatc |
29587636 |
T |
|
| Q |
112 |
aaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttaccttaga |
177 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
29587635 |
aaattcaacatcat-aatctatcattttcattcaaatcatggtcaagactagagcccttaccttaga |
29587570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 13168000 - 13167881
Alignment:
| Q |
56 |
aaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtc |
154 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
13168000 |
aaaataataaaacacaataaatcttttccctcatccattaaatcaagaagcatatcaaattcaacatcat-aatctatcattttcacttaaatcatggtc |
13167902 |
T |
|
| Q |
155 |
aagactagagcccttacctta |
175 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
13167901 |
aagactagagcccttacctta |
13167881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 8311891 - 8311731
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaa-cacaataaatcttttcactcatccattaaatcaagaagcatatc |
111 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||||| |||| |||||||| || ||||||||||||||| ||||||| ||||||||||||| || |
|
|
| T |
8311891 |
aaaattgcaaatcaccaattcttataattatcaactacaaagaaaagtaataaaaacataataaatcttttcacccatccatcgaatcaagaagcatgtc |
8311792 |
T |
|
| Q |
112 |
aaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttacc |
172 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
8311791 |
aaattcaacatcat-aatctattattttcagttaaatcatggtcaagactagagcacttacc |
8311731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 46002795 - 46002887
Alignment:
| Q |
69 |
acaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagacta |
161 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| || |||| ||||||||||||| |||| ||||||||| |
|
|
| T |
46002795 |
acaattaatcttttcactcatccattgaatcaagaagcatatcaaattcaatatca-caacctattattttcatttaaatcatgatcaagacta |
46002887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 31211188 - 31211093
Alignment:
| Q |
75 |
aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcattta-aacatggtcaagactagagccctta |
170 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||||||||| || ||||| || |||| |||||||| || | |||| |||||||||||||||||| |
|
|
| T |
31211188 |
aatctcttcacgcatctattaaatcaagaagcatatcaaatttaatatcat-aacctattattttcatctagatcatgatcaagactagagccctta |
31211093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 31654571 - 31654726
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31654571 |
aaaattgcaactcaccaattcttataattagcaactacaagaaaa-ataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
31654669 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagccctta |
170 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31654670 |
aatccaacatcat-aatctatcattttcatttaaacatggtcaagactagagccctta |
31654726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 51443522 - 51443650
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51443522 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaat-taataaaacataataaatcttttcactcatccattaaatcaagaagcatatca |
51443620 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatt |
143 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
|
|
| T |
51443621 |
aattcaacatcat-aatctatcattttcatt |
51443650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 13380218 - 13380378
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
13380218 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaat-taataaaacataataaatcttttcactcatcca-tgaatcaagaagtatatca |
13380315 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttacctta |
175 |
Q |
| |
|
|||||||| |||| || |||||||||||| ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13380316 |
aattcaacgtcat-aacctatcattttcacttaaatcatggtcaagactagaacccttacctta |
13380378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 15990169 - 15990402
Alignment:
| Q |
16 |
attgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaat |
115 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||| ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15990169 |
attgcaacccaccaattcttataattatcaactacaagaaaat-taataaaacataataattcttttcactcatccattaaatcaagaagcatatcaaat |
15990267 |
T |
|
| Q |
116 |
tcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttaccttagata--------ctctccttcctagccgaataacctcta |
206 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| || |
|
|
| T |
15990268 |
tcaacgtcat-aatctatcattttcagttaaatcatggtcaagactagagcccttaccttagatacttagatgctctccttcttagtcgaataaccttta |
15990366 |
T |
|
| Q |
207 |
aatttatacgcatcattcttcgctccgcaaactcaa |
242 |
Q |
| |
|
||| ||||||||||| ||||||||| || ||||||| |
|
|
| T |
15990367 |
aatctatacgcatcactcttcgctctgctaactcaa |
15990402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 29453806 - 29453643
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaa-cacaataaatcttttcactcatccattaaatcaagaagcatatc |
111 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
29453806 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaat-taataaaaacataataaatcttttcactcatccatgaa-tcaagaagcatatc |
29453709 |
T |
|
| Q |
112 |
aaattcaacatcataa---atctatcattttcatttaaacatggtcaagactagagcccttacctt |
174 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
29453708 |
aaattcaatgtcataatctatctatcattttcatttaaacatggtcaaaactagagtccttacctt |
29453643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 40888687 - 40888848
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||| | |||| |||||||| | |||||||||||||||||||||| | ||||||||||||||| | |
|
|
| T |
40888687 |
aaaattgcaactcaccaattcatataattatcaactacaag-aaaattaataaaatataataaatcttttcactcatcca-tgaatcaagaagcatatta |
40888784 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttaccttag |
176 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
40888785 |
aattcaacgtcat-aatctatcattttcaattaaatcatggccaagactagggcccttaccttag |
40888848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 52641386 - 52641489
Alignment:
| Q |
72 |
ataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagccctta |
170 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
52641386 |
ataaatcttttcactcatccattgagtcaagaagcatatcaaattcaacatcat-aatctatcattttcaattaaatcatggtcaaaactagagccctta |
52641484 |
T |
|
| Q |
171 |
cctta |
175 |
Q |
| |
|
||||| |
|
|
| T |
52641485 |
cctta |
52641489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 19544714 - 19544811
Alignment:
| Q |
71 |
aataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcattta-aacatggtcaagactagagccctt |
169 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| || |||||| ||||||||| | |||| ||| ||||||||||||| |
|
|
| T |
19544714 |
aataaatcttttcactcatccatcgaatcaataagcatatc-aattcaacatcat-aacctatcactttcatttagatcatgatcatgactagagccctt |
19544811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 11650592 - 11650683
Alignment:
| Q |
84 |
actcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttacctta |
175 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| |||| || | || |||||| |||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
11650592 |
actcatcaattgaatcaagaagcatatcaaattcaatatca-caaccaattattttcttttaaatcatggttaagactatagcccttacctta |
11650683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 108014 - 107863
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
108014 |
aaaattgcaactcaccaattcttataattagcaactacaacaaaaa-taataaaatacaataaatcttttcactcatccattaaatcaaggagcatatca |
107916 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcc |
166 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107915 |
aattcaacatcat-aatctatcattttcatttaaacatggtcaagactagagcc |
107863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 27977147 - 27977323
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||| ||||| |||||||| |||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27977147 |
aaaattgcaactcacaaattcatataattatcaactacaagaaaat-taatgaaacataataaatcttttcactcatccattaaatcaagaagcatatca |
27977245 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagatactctccttccta |
191 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
27977246 |
aattcaacatcat-aatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctttccttccta |
27977323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 28063675 - 28063851
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||| ||||| |||||||| |||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28063675 |
aaaattgcaactcacaaattcatataattatcaactacaagaaaat-taatgaaacataataaatcttttcactcatccattaaatcaagaagcatatca |
28063773 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttaccttagatactctccttccta |
191 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
28063774 |
aattcaacatcat-aatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctttccttccta |
28063851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 29046559 - 29046702
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
29046559 |
aaaattgcaactcaccaattctta--attagcaactacaagaaaa-ataataaaatacaataaatattttcaatcatccattaaatcaaggagcatatca |
29046655 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagact |
160 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
29046656 |
aattcaacatcat-aatctatcattttcatttaaacatggtctagact |
29046702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 16131078 - 16131237
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||| ||||| |||||||| | | |||||||||||||||||| | | ||||||||||||| || |
|
|
| T |
16131078 |
aaaattgcaactcaccaattcatataattatcaactaca-aaaaaattaataaaatatagtaaatcttttcactcatcta-tgaatcaagaagcatgtcg |
16131175 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttacctt |
174 |
Q |
| |
|
|||||| |||||| || |||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
16131176 |
aattcagcatcat-aacctatcattttcaattaaaccatggtcaagactagagcccttacctt |
16131237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 175
Target Start/End: Original strand, 28497230 - 28497349
Alignment:
| Q |
55 |
aaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggt |
153 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| ||| || ||||||||||| || ||||||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
28497230 |
aaaattaataaaacataataaatcttttcactcattcatgaa-tcaagaagcatgtcgaattcaacatcataac-ctatcattttcaattaaatcatggt |
28497327 |
T |
|
| Q |
154 |
caagactagagcccttacctta |
175 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28497328 |
caagactagagcccttacctta |
28497349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 22403915 - 22403747
Alignment:
| Q |
16 |
attgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatca------------aga |
103 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||| || ||||| |||||||||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
22403915 |
attgcaacccaccaattcttataattattaacttcaagaaaat-taataaaacataataaatcttttcactcatccatcgaatcatccatcgaatcaaga |
22403817 |
T |
|
| Q |
104 |
agcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagcccttacct |
173 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| ||||| |||||| ||||||||||||||||||| |
|
|
| T |
22403816 |
agcatatcaaattcaacatcat-aatctattattttcagttaaatcatggtaaagactagagcccttacct |
22403747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 2181 - 2023
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
112 |
Q |
| |
|
||||||| || |||||||||| |||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2181 |
aaaattgcaagtcaccaattcatataattatcaactacaagaaaat-taataaaacataataaatcttttcactcatccattaaatcaagaagcatatca |
2083 |
T |
|
| Q |
113 |
aattcaacatcataaatctatcattttcatttaaacatggtcaagactagagcccttacct |
173 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2082 |
aattcaacatcat-aatctattgttttcatttaaatatggtcaagactagagcccttacct |
2023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 2544 - 2663
Alignment:
| Q |
59 |
ataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaag |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||| ||||| ||||||||| |
|
|
| T |
2544 |
ataataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcat-aacctatcattttcaattaaatcatggtcaaa |
2642 |
T |
|
| Q |
158 |
actagagcccttaccttagat |
178 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2643 |
actagagcccttaccttagat |
2663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 148393 - 148438
Alignment:
| Q |
13 |
aaaattgtaactcaccaattcttataattagcaactacatgaaaaa |
58 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
148393 |
aaaattgcaactcaccaattcttataattagcaactacaagaaaaa |
148438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 18927154 - 18927255
Alignment:
| Q |
71 |
aataaatcttttcactcatccattaaatc-aagaagcatatcaaattcaacatcataaatctatcattttcatttaaa-catggtcaagactagagccct |
168 |
Q |
| |
|
||||||||| | ||| ||||| || |||| ||||||||||||||||||||| |||| || |||| |||||||| |||| ||||||||||| |||||||| |
|
|
| T |
18927154 |
aataaatctctccacccatccgttgaatccaagaagcatatcaaattcaacttcat-aacctattattttcatctaaataatggtcaagacaagagccct |
18927252 |
T |
|
| Q |
169 |
tac |
171 |
Q |
| |
|
||| |
|
|
| T |
18927253 |
tac |
18927255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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