View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1860_low_42 (Length: 246)

Name: NF1860_low_42
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1860_low_42
NF1860_low_42
[»] chr1 (2 HSPs)
chr1 (1-238)||(3791842-3792063)
chr1 (200-238)||(25941731-25941769)
[»] chr4 (2 HSPs)
chr4 (141-238)||(16049033-16049130)
chr4 (136-238)||(16023131-16023233)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3792063 - 3791842
Alignment:
Q  1 aactaaaaaagaagttgtttagcaccagtttgtgtgtaaataatttcttttttcagttgaaagaattctaagcattgctctcaaactactttacttagca 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  3792063 aactaaaaaagaagttgtttagcaccggtttgtgtgtaaataatttcttttttcagctgaaagaattcaaa-cattgctctcaaactactttacttagca 3791965  T
Q  101 tatatattttaatttcaannnnnnnnnccttccttaaattaaacgcacgttgcaaccccgggcttctctgaaatttaaaggaagtgaaagccccattgca 200  Q
    ||||||||||    ||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3791964 tatatatttt----tc-----------ccttccttaaattaaacgcacgttgcaaccccgggcttctctgaaatttaaaggaagtgaaagccccattgca 3791880  T
Q  201 cgtgctaaattgatgccattcgtgttgcagttcatctc 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3791879 cgtgctaaattgatgccattcgtgttgcagttcatctc 3791842  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 25941769 - 25941731
Alignment:
Q  200 acgtgctaaattgatgccattcgtgttgcagttcatctc 238  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  25941769 acgtgcaaaatcgatgccattcgtgttgcagttcatctc 25941731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 16049130 - 16049033
Alignment:
Q  141 aaacgcacgttgcaaccccgggcttctctgaaatttaaaggaagtgaaagccccattgcacgtgctaaattgatgccattcgtgttgcagttcatctc 238  Q
    |||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  16049130 aaacgcacgttgcaaccccgggcttcgctgaaatttgaatgaagtgaaagccccattgcacgtgcaaaatcgatgccattcgtgttgcagttcatctc 16049033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 16023233 - 16023131
Alignment:
Q  136 aaattaaacgcacgttgcaaccccgggcttctctgaaatttaaaggaagtgaaagccccattgcacgtgctaaattgatgccattcgtgttgcagttcat 235  Q
    |||| ||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  16023233 aaataaaacgcatgttgcaaccccgggcttcgctgaaatttgaatgaagtgaaagccccattgcacgtgcaaaatcgatgtcattcgtgttgcagttcat 16023134  T
Q  236 ctc 238  Q
    |||    
T  16023133 ctc 16023131  T

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