View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_45 (Length: 239)
Name: NF1860_low_45
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 52580499 - 52580657
Alignment:
| Q |
1 |
cgcacatttctacatcacctcgaagtttcatcaatccaccaccaacacc------tccaccgcattcgtcaccgaattcaaccacatcggagcctcggca |
94 |
Q |
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| T |
52580499 |
cgcacatttctacatcacctcgaagtttcatcaatccaccaccaacacctccacctccaccgcattcgtcaccgaattcaaccacatcggaccctcggca |
52580598 |
T |
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| Q |
95 |
tccagcaacaccaccagcccctggggaataatagaatggttaaaattagtcaatgattc |
153 |
Q |
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| T |
52580599 |
tccagcaacaccaccagcccctggggaataataaaatggttgaaattagtcaatgattc |
52580657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 52580679 - 52580713
Alignment:
| Q |
175 |
tgtatgtttgatattaccgaacatgcaagaaaaaa |
209 |
Q |
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| T |
52580679 |
tgtatgtttgatattaccgaacatgcaagaaaaaa |
52580713 |
T |
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