View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_46 (Length: 238)
Name: NF1860_low_46
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_46 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 40092668 - 40092447
Alignment:
| Q |
17 |
aggacatacatgatacttgcaaactcttggagccaatttacaacgaaagtgatggtatagatgggtatgtatcaattgcagtctcccccaagcttgcaaa |
116 |
Q |
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| T |
40092668 |
aggacatacatgatacttgcaaactcttggagccaatttacaacgaaagtgatggtatagatgggtatgtatcaattgcagtctcccccgagcttgcaaa |
40092569 |
T |
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| Q |
117 |
tgacaccaaagggacaattaatgcagcaaaatgtcttcataaaatggttggatgtccaaatgtttatattaaaattcctgcaactcatgaatccattcct |
216 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092568 |
tgacaccaaagggacaattgaggcagcaaaatgtcttcataaaatggttggatgtccaaatgtttatattaaaattcctgcaactcatgaatccattcct |
40092469 |
T |
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| Q |
217 |
tcaataaaggaagtcatttctc |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
40092468 |
tcaataaaggaagtcatttctc |
40092447 |
T |
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