View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1860_low_49 (Length: 237)
Name: NF1860_low_49
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_49 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 27539847 - 27539611
Alignment:
| Q |
1 |
attgaattacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgcccactactttaccgactcctatggggagccataaagaaacagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27539847 |
attgaattacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgcccactgctttaccgactcctatggggatccataaagaaacagaaa |
27539748 |
T |
|
| Q |
101 |
caacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgcatgagagagtagttcctgt |
200 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
27539747 |
caacaacggcttcattgcaaattgaaacaattcagaaccaaggggaagcaattccgatccaagaggaaacacatgatgcgcaggagggagtagttcctgt |
27539648 |
T |
|
| Q |
201 |
catatcagaggctgtgcccgcagttttaccgactcct |
237 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
27539647 |
cagatcagaggcagtgcccgcagttttaccgactcct |
27539611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 16599701 - 16599465
Alignment:
| Q |
1 |
attgaattacatgatgcacacgaggagttagctcttgtcagatcagaggcagtgcccactactttaccgactcctatggggagccataaagaaacagaaa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16599701 |
attgaattacatgatgcgcacgaggagttagctcttatcagatcagaggcagtgcccactgctttaccgactcctatggggagccataaagaaacagaaa |
16599602 |
T |
|
| Q |
101 |
caacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgcatgagagagtagttcctgt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||| ||||||| |
|
|
| T |
16599601 |
caacaacgacttcattgcaaattgaaacaattcagaaccaaggggaagcaattccgatccaagaggaaacacatgatgctcaggagggagtaattcctgt |
16599502 |
T |
|
| Q |
201 |
catatcagaggctgtgcccgcagttttaccgactcct |
237 |
Q |
| |
|
|| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
16599501 |
cagatcagaggcaatgccctcagttttaccgactcct |
16599465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 15200305 - 15200151
Alignment:
| Q |
83 |
gccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgca |
182 |
Q |
| |
|
||||| |||||| ||||||| |||| | ||||||| |||||||| || |||| ||||||||||||||||||| | ||||||| |||| ||| |||||||| |
|
|
| T |
15200305 |
gccatcaagaaatagaaacagcaacagcttcattgaaaattgaagcatttcaaaaccaaggggaagcaattccggtccaagatgaaatacaggatgcgca |
15200206 |
T |
|
| Q |
183 |
tgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcct |
237 |
Q |
| |
|
||| |||||||||||||| |||||||| || | |||||||||||||||||| |
|
|
| T |
15200205 |
agaggaagtagttcctgtcagatcagaggtagtagctgcagttttaccgactcct |
15200151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 15219390 - 15219236
Alignment:
| Q |
83 |
gccataaagaaacagaaacaacaactgtttcattgcaaattgaaacaattcagaaccaaggggaagcaattctgatccaagaggaaacacatgatgcgca |
182 |
Q |
| |
|
||||| |||||| ||||||| ||| | |||||||||||||||| || |||||||| ||||||||||||||| | ||||||| |||| ||| ||||||| |
|
|
| T |
15219390 |
gccatcaagaaatagaaacagcaatagcttcattgcaaattgaagcatttcagaactaaggggaagcaattccggtccaagatgaaatacaggatgcgcg |
15219291 |
T |
|
| Q |
183 |
tgagagagtagttcctgtcatatcagaggctgtgcccgcagttttaccgactcct |
237 |
Q |
| |
|
||| |||||||||||||| |||| |||| |||| ||||||||||| |||||| |
|
|
| T |
15219290 |
agaggaagtagttcctgtcagatcataggcagtgcttgcagttttaccaactcct |
15219236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University