View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1860_low_5 (Length: 471)
Name: NF1860_low_5
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 35621791 - 35622234
Alignment:
| Q |
18 |
acaaattccacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtacattgctacgcaagaaggtatttccattgaagca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
35621791 |
acaaattccacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtatattgctacgcaagaaggtatttccattgaagca |
35621890 |
T |
|
| Q |
118 |
ctaaaaactacagccaaataaatgttgaaccctaaatttccaacagctagtggcataccataataaaccattccaattccaatactaagaatcataacag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35621891 |
ctaaaaactacagccaaataaatgttgaaccctaaatttccaacagctagtggcataccataataaaccattccaattccaatactaagaatcataacag |
35621990 |
T |
|
| Q |
218 |
ctatcattcttataagagcccattttttatgaaacaattttcctattgaagagtaatgtttaaaaattgaaattttttcttttgcgggcggctttggtaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
35621991 |
ctatcattcttataagagcccattttttatgaaacaattttcctattgaagagtaatgtttaaaaattgaaattttttcttttgcgggcggttttggtaa |
35622090 |
T |
|
| Q |
318 |
acttgaagctaggttaatgttatcatcatcaacactttcttctgatgaaactttattgagcattttcagaatttctttctctctaccttgcataacaagc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35622091 |
acttgaagctaggttaatgttatcatcatcaacactttcttctgatgaaactttattgagcattttcagaatttctttctctcgaccttgcataacaagc |
35622190 |
T |
|
| Q |
418 |
caccttggcgactcggtaacgaagaaataagcaatgaaggagta |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35622191 |
caccttggcgactcggtaacgaagaaataagcaatgaaggagta |
35622234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 34262870 - 34263309
Alignment:
| Q |
18 |
acaaattccacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtacattgctacgcaagaaggtatttccattgaagca |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| || || |||||||||||||||||| |
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|
| T |
34262870 |
acaaattccacctaagattgagaaaacaagaattgaaggttttcttctatagttttccaagaaatatgttgctacacatgagggtatttccattgaagca |
34262969 |
T |
|
| Q |
118 |
ctaaaaactacagccaaataaatgttgaaccctaaatttccaacagctagtggcataccataataaaccattccaattccaatactaagaatcataacag |
217 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |
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|
| T |
34262970 |
ctaaaaaccacagccaaataaatattgaatcccaaatttccaactgctagtggcataccaagataaaccattccaattccaattccaagaatcataacag |
34263069 |
T |
|
| Q |
218 |
ctatcattcttataagagcccattttttatgaaacaattttcctattgaagagtaatgtttaaaaattgaaattttttcttttgcgggcggctttggtaa |
317 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| |||||||| || |||||||||| ||| || |||||||| |
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|
| T |
34263070 |
ctattattcttataagagcccatcttttatgaatcaattcacctattgaagagtaatgttgaaaaattgtaaccttttcttttgtgggtggttttggtaa |
34263169 |
T |
|
| Q |
318 |
acttgaagctaggttaatgtt---atcatcatcaacactttcttctgatgaaactttattgagcattttcagaatttctttctctctaccttgcataaca |
414 |
Q |
| |
|
||| ||| |||| ||| |||| |||||||||||||||||||| |||| ||||| | |||||| |||| | |||||||||||||| ||||||||||| | |
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|
| T |
34263170 |
actcgaacctagattagtgttatcatcatcatcaacactttcttttgataaaactcttttgagcctttttataatttctttctctcgaccttgcataata |
34263269 |
T |
|
| Q |
415 |
agccaccttggcgactcggtaacgaagaaataagcaatga |
454 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34263270 |
agccaccttggcgactcagtaacgaagaaataagcaatga |
34263309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 14579662 - 14580098
Alignment:
| Q |
18 |
acaaattccacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtacattgctacgcaagaaggtatttccattgaagca |
117 |
Q |
| |
|
||||||||||| |||||| || || |||||||||||| ||||||||||| |||||||||||| || ||||||| || ||||||| ||||||||||||| |
|
|
| T |
14579662 |
acaaattccacctaagatagaaaacacaagaattgaaggttttcttctaaggttttccaagaaatatgttgctacacaggaaggtaattccattgaagca |
14579761 |
T |
|
| Q |
118 |
ctaaaaactacagccaaataaatgttgaaccctaaatttccaacagctagtggcataccataataaaccattccaattccaatactaagaatcataacag |
217 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
14579762 |
ctaaaaaccacagccaagtaaatgttgaatcctaaatttccaacagctagtggcataccaaaataaaccattccaagtccaattccaagaatcataacag |
14579861 |
T |
|
| Q |
218 |
ctatcattcttataagagcccattttttatgaaacaattttcctattgaagagtaatgtttaaaaattgaaattttttcttttgcgggcggctttggtaa |
317 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| |||| ||||||||| |||||| ||| ||||| ||||| ||||||||||| ||| | |||||||| |
|
|
| T |
14579862 |
ctatcattcttataacagcccatcttttatgaaataattctcctattgatgagtaaagttgaaaaaatgaaactttttcttttgggggaagttttggtaa |
14579961 |
T |
|
| Q |
318 |
acttgaagctaggttaatgttatcatcatcaacactttcttctgatgaaactttattgagcattttcagaatttctttctctctaccttgcataacaagc |
417 |
Q |
| |
|
| | ||||||| ||||| | |||||||||| |||||||||| || ||||| | ||||||||||||| |||||||||||||| |||||||||||||||| |
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|
| T |
14579962 |
attcgaagctaagttaacgctatcatcatcggcactttcttcagaagaaacccttttgagcattttcaaaatttctttctctcgaccttgcataacaagc |
14580061 |
T |
|
| Q |
418 |
caccttggcgactcggtaacgaagaaataagcaatga |
454 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
14580062 |
cacctaggcgactcggtaacaaagagataagcaatga |
14580098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 14543925 - 14543489
Alignment:
| Q |
18 |
acaaattccacttaagattgagaaaacaagaattgaaagttttcttctatagttttccaagaagtacattgctacgcaagaaggtatttccattgaagca |
117 |
Q |
| |
|
||||||||||| |||||| || || |||||||||||| ||||||||||| |||||||||||| || ||||||| || ||||||| ||||||||||||| |
|
|
| T |
14543925 |
acaaattccacctaagatagaaaacacaagaattgaaggttttcttctaaggttttccaagaaatatgttgctacacatgaaggtaattccattgaagca |
14543826 |
T |
|
| Q |
118 |
ctaaaaactacagccaaataaatgttgaaccctaaatttccaacagctagtggcataccataataaaccattccaattccaatactaagaatcataacag |
217 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
14543825 |
ctaaaaaccactgccaattaaatgttgaatcctaaatttccaacagctagtggcatacctaaataaaccattccaagtccaattccaagaatcataacag |
14543726 |
T |
|
| Q |
218 |
ctatcattcttataagagcccattttttatgaaacaattttcctattgaagagtaatgtttaaaaattgaaattttttcttttgcgggcggctttggtaa |
317 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| |||| ||||||||| |||||| ||| ||||| ||||| ||||||||||| ||| | |||||||| |
|
|
| T |
14543725 |
ctatcattcttataacagcccatcttttatgaaataattctcctattgatgagtaaagttgaaaaaatgaaactttttcttttgggggaagttttggtaa |
14543626 |
T |
|
| Q |
318 |
acttgaagctaggttaatgttatcatcatcaacactttcttctgatgaaactttattgagcattttcagaatttctttctctctaccttgcataacaagc |
417 |
Q |
| |
|
| | ||||||| ||||| | |||||||||| |||||||||| || ||||| | ||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
14543625 |
attcgaagctaagttaacgctatcatcatcggcactttcttcagaagaaacccttttgagcattttcaaaatttctttctctcgaccttgcataacaagc |
14543526 |
T |
|
| Q |
418 |
caccttggcgactcggtaacgaagaaataagcaatga |
454 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
14543525 |
cacctaggcgactcggtaacaaagagataagcaatga |
14543489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 10404844 - 10404724
Alignment:
| Q |
94 |
caagaaggtatttccattgaagcactaaaaactacagccaaataaatgttgaaccctaaatttccaacagctagtggcataccataataaaccattccaa |
193 |
Q |
| |
|
||||| ||||||||||| | ||| |||| || || ||||| ||||||| ||| ||||| |||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
10404844 |
caagacggtatttccatcaaggcattaaacacaacggccaagtaaatgtcgaatcctaagtttccaacggcgagtggcataccaaaataaaccattccaa |
10404745 |
T |
|
| Q |
194 |
ttccaatactaagaatcataa |
214 |
Q |
| |
|
|||| |||| ||||| ||||| |
|
|
| T |
10404744 |
ttcccataccaagaaccataa |
10404724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 37577599 - 37577694
Alignment:
| Q |
45 |
aagaattgaaagttttcttctatagttttccaagaagtacattgctacgcaagaaggtatttccattgaagcactaaaaactacagccaaataaat |
140 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| || || ||| || ||||||||| |||||||||| ||||||| |||||||||||||| |
|
|
| T |
37577599 |
aagaattgaaggttttcttctatagttttccaagaaatatgttactaaacataaaggtattttcattgaagcattaaaaaccacagccaaataaat |
37577694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 10378858 - 10378725
Alignment:
| Q |
94 |
caagaaggtatttccattgaagcactaaaaactacagccaaataaatgttgaaccctaaatttccaacagctagtggcataccataataaaccattccaa |
193 |
Q |
| |
|
||||| ||||||||||| || || | || || |||||||||||||||| || ||||| |||||||| |||| ||||| ||| |||| |||||||||| |
|
|
| T |
10378858 |
caagacggtatttccatcaaaccattgaacacaacagccaaataaatgtcaaaacctaagtttccaacggctaaaggcattccaaaatagaccattccaa |
10378759 |
T |
|
| Q |
194 |
ttccaatactaagaatcataacagctatcattct |
227 |
Q |
| |
|
||||||||| ||||| ||| || || |||||||| |
|
|
| T |
10378758 |
ttccaataccaagaaccattaccgccatcattct |
10378725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 454
Target Start/End: Complemental strand, 10404560 - 10404496
Alignment:
| Q |
390 |
ttctttctctctaccttgcataacaagccaccttggcgactcggtaacgaagaaataagcaatga |
454 |
Q |
| |
|
|||||| | |||||||||||| | |||||| ||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
10404560 |
ttctttgtttctaccttgcattagaagccatcttggagactcggtaacaaagaaataaccaatga |
10404496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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