View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_50 (Length: 237)
Name: NF1860_low_50
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36017141 - 36017361
Alignment:
| Q |
1 |
taatccataaagctcggctgcacgtgcgctggcgatagccgcagtgtcgcggagattgttagtcgcaacaaactccgcggcacctgcagtatcatcaact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| |
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| T |
36017141 |
taatccataaagctcggctgcacgtgcgctggcgatagcagcagtgtcgcggagattgttagttgcaacaaactccgcagcacctgcagtatcgtcaact |
36017240 |
T |
|
| Q |
101 |
gcttcacgtgcgacgttgaggccgagttttgttaatgtgtgttcgcattgagataaagcttgtggatgagatatgacacgtgtcagatattcttttctga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36017241 |
gcttcacgtgcgacgttgaggccgagttttgttaatgtgtgttcgcattgagataaagcttgtggatgagagatgacacgtgtcagatattcttttctga |
36017340 |
T |
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| Q |
201 |
ttccggggagagcgaggagac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
36017341 |
ttccggggagagcgaggagac |
36017361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 20137847 - 20137629
Alignment:
| Q |
1 |
taatccataaagctcggctgcacgtgcgctggcgatagccgcagtgtcgcggagattgttagtcgcaacaaactccgcggcacctgcagtatcatcaact |
100 |
Q |
| |
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|||||| |||||||| || || ||||||||||||||||| |||||||||||||| || || | | || ||||||||||||||| || ||||| ||||| |
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| T |
20137847 |
taatccgtaaagctctgcagcgcgtgcgctggcgatagcagcagtgtcgcggaggttatttgcagtaataaactccgcggcaccagctgtatcgtcaacg |
20137748 |
T |
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| Q |
101 |
gcttcacgtgcgacgttgaggccgagttttgttaatgtgtgttcgcattgagataaagcttgtggatgagatatgacacgtgtcagatattcttttctga |
200 |
Q |
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|| ||||| || |||||||||||||| |||||||| |||| ||||||||||| ||| ||||||||||| || || || ||||| | ||||||||||| || |
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| T |
20137747 |
gcctcacgcgctacgttgaggccgagctttgttaacgtgttttcgcattgagctaatgcttgtggatgcgaaatcacgcgtgttaaatattcttttcgga |
20137648 |
T |
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| Q |
201 |
ttccggggagagcgaggag |
219 |
Q |
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||| || || |||||||| |
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| T |
20137647 |
ctcctggaagtgcgaggag |
20137629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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