View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1860_low_54 (Length: 224)

Name: NF1860_low_54
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1860_low_54
NF1860_low_54
[»] chr8 (16 HSPs)
chr8 (130-199)||(22212255-22212324)
chr8 (43-109)||(40380280-40380346)
chr8 (41-108)||(9985682-9985749)
chr8 (43-108)||(9314411-9314476)
chr8 (41-108)||(13884164-13884231)
chr8 (41-107)||(20995062-20995128)
chr8 (71-109)||(30136049-30136087)
chr8 (71-109)||(40413372-40413410)
chr8 (71-109)||(42569751-42569789)
chr8 (74-107)||(42126-42159)
chr8 (58-107)||(3207432-3207481)
chr8 (71-108)||(21467384-21467421)
chr8 (41-109)||(23708975-23709043)
chr8 (41-109)||(27630896-27630964)
chr8 (68-104)||(34972208-34972244)
chr8 (71-107)||(45108691-45108727)
[»] chr3 (23 HSPs)
chr3 (41-109)||(44910696-44910764)
chr3 (41-108)||(1402650-1402717)
chr3 (41-109)||(34900639-34900707)
chr3 (41-108)||(29525233-29525300)
chr3 (41-109)||(20549389-20549457)
chr3 (41-108)||(49130854-49130921)
chr3 (43-109)||(8254026-8254092)
chr3 (41-109)||(37585429-37585498)
chr3 (41-109)||(49417574-49417643)
chr3 (41-109)||(7218-7286)
chr3 (46-109)||(44855250-44855313)
chr3 (71-109)||(1765403-1765441)
chr3 (71-109)||(3281738-3281776)
chr3 (71-109)||(43333704-43333742)
chr3 (71-109)||(46094422-46094460)
chr3 (43-109)||(50652387-50652453)
chr3 (72-109)||(6999168-6999205)
chr3 (43-108)||(11327108-11327173)
chr3 (68-109)||(14992218-14992259)
chr3 (71-108)||(30567994-30568031)
chr3 (71-107)||(40499737-40499773)
chr3 (45-109)||(41717262-41717326)
chr3 (41-108)||(55399999-55400067)
[»] chr7 (22 HSPs)
chr7 (41-102)||(10591341-10591402)
chr7 (41-109)||(27704434-27704502)
chr7 (43-109)||(27164843-27164909)
chr7 (43-108)||(2347065-2347130)
chr7 (41-105)||(11564896-11564961)
chr7 (41-109)||(40231709-40231777)
chr7 (68-104)||(46456559-46456595)
chr7 (71-107)||(49025337-49025373)
chr7 (43-109)||(116630-116696)
chr7 (71-109)||(28862104-28862142)
chr7 (46-108)||(29162288-29162350)
chr7 (43-105)||(37385239-37385301)
chr7 (71-109)||(47078273-47078311)
chr7 (71-104)||(2346951-2346984)
chr7 (71-108)||(22638918-22638955)
chr7 (71-108)||(26153646-26153683)
chr7 (43-108)||(33050183-33050248)
chr7 (41-109)||(4971289-4971357)
chr7 (41-109)||(7990078-7990146)
chr7 (41-109)||(28548225-28548293)
chr7 (68-104)||(42060800-42060836)
chr7 (41-109)||(48639387-48639455)
[»] chr4 (19 HSPs)
chr4 (41-109)||(45521583-45521651)
chr4 (41-109)||(6126852-6126920)
chr4 (41-109)||(36512841-36512909)
chr4 (41-109)||(41609683-41609751)
chr4 (41-108)||(24772671-24772738)
chr4 (43-109)||(3222988-3223054)
chr4 (41-108)||(36364789-36364860)
chr4 (71-109)||(38864770-38864808)
chr4 (71-109)||(41262652-41262690)
chr4 (43-109)||(44368208-44368274)
chr4 (43-108)||(3475869-3475934)
chr4 (71-108)||(17683236-17683273)
chr4 (68-109)||(56025399-56025440)
chr4 (41-109)||(5208331-5208399)
chr4 (41-109)||(8455860-8455928)
chr4 (68-104)||(24019863-24019899)
chr4 (41-108)||(30170023-30170091)
chr4 (41-109)||(44272814-44272882)
chr4 (41-109)||(50291281-50291349)
[»] chr2 (21 HSPs)
chr2 (41-105)||(3366401-3366465)
chr2 (41-109)||(18508077-18508145)
chr2 (71-109)||(15141472-15141510)
chr2 (71-107)||(8087372-8087408)
chr2 (41-109)||(23344993-23345061)
chr2 (41-108)||(14713986-14714053)
chr2 (41-107)||(26206848-26206915)
chr2 (58-105)||(43791823-43791870)
chr2 (75-109)||(2013323-2013357)
chr2 (43-109)||(27307237-27307303)
chr2 (71-109)||(29871386-29871424)
chr2 (43-109)||(35171232-35171298)
chr2 (43-109)||(36383461-36383527)
chr2 (43-108)||(3196093-3196158)
chr2 (71-104)||(11548069-11548102)
chr2 (71-108)||(43725216-43725253)
chr2 (41-109)||(44050014-44050083)
chr2 (68-105)||(45372605-45372642)
chr2 (41-108)||(6999071-6999139)
chr2 (68-104)||(12175220-12175256)
chr2 (41-109)||(12256900-12256968)
[»] chr1 (32 HSPs)
chr1 (41-109)||(2854964-2855032)
chr1 (46-105)||(16234303-16234362)
chr1 (41-109)||(34008179-34008248)
chr1 (41-109)||(51286370-51286439)
chr1 (41-109)||(17167848-17167916)
chr1 (41-109)||(32873340-32873408)
chr1 (43-109)||(7078506-7078572)
chr1 (43-105)||(34395925-34395987)
chr1 (43-109)||(42256459-42256525)
chr1 (41-109)||(32915075-32915144)
chr1 (41-109)||(47214207-47214276)
chr1 (41-109)||(40610228-40610296)
chr1 (43-109)||(29706708-29706775)
chr1 (70-109)||(29877018-29877057)
chr1 (41-107)||(5574263-5574329)
chr1 (43-109)||(11097890-11097956)
chr1 (43-109)||(18610772-18610838)
chr1 (71-105)||(24265612-24265646)
chr1 (71-109)||(24673068-24673106)
chr1 (43-109)||(29489365-29489431)
chr1 (71-109)||(35883641-35883679)
chr1 (71-109)||(37588709-37588747)
chr1 (41-109)||(10890049-10890118)
chr1 (41-109)||(15705065-15705134)
chr1 (72-109)||(34254386-34254423)
chr1 (71-108)||(46947981-46948018)
chr1 (41-109)||(52362481-52362550)
chr1 (41-109)||(12999826-12999894)
chr1 (41-108)||(13489662-13489730)
chr1 (41-109)||(21854468-21854536)
chr1 (41-109)||(37843436-37843504)
chr1 (42-109)||(45008168-45008236)
[»] scaffold0016 (1 HSPs)
scaffold0016 (41-109)||(204451-204517)
[»] chr5 (13 HSPs)
chr5 (41-108)||(4820155-4820222)
chr5 (46-108)||(15917999-15918061)
chr5 (71-109)||(22402660-22402698)
chr5 (41-107)||(34400619-34400685)
chr5 (71-108)||(9933500-9933537)
chr5 (41-109)||(19839989-19840058)
chr5 (75-108)||(19983841-19983874)
chr5 (44-109)||(35814452-35814517)
chr5 (41-109)||(125091-125159)
chr5 (41-108)||(6517712-6517780)
chr5 (68-104)||(10372182-10372218)
chr5 (41-109)||(11880991-11881059)
chr5 (41-109)||(24329986-24330054)
[»] chr6 (13 HSPs)
chr6 (43-109)||(27334857-27334923)
chr6 (43-109)||(27395597-27395663)
chr6 (41-109)||(15722507-15722575)
chr6 (42-109)||(34792021-34792088)
chr6 (75-109)||(2943445-2943479)
chr6 (43-109)||(3339505-3339571)
chr6 (43-109)||(17902698-17902764)
chr6 (71-109)||(30906697-30906735)
chr6 (41-109)||(18141304-18141373)
chr6 (41-109)||(20822871-20822940)
chr6 (68-109)||(25924751-25924792)
chr6 (41-109)||(32729888-32729956)
chr6 (41-108)||(35213564-35213632)
[»] scaffold0003 (1 HSPs)
scaffold0003 (41-109)||(337117-337185)
[»] scaffold0002 (1 HSPs)
scaffold0002 (41-108)||(6427-6494)
[»] scaffold0221 (1 HSPs)
scaffold0221 (71-109)||(8213-8251)
[»] scaffold0154 (1 HSPs)
scaffold0154 (41-109)||(4314-4382)
[»] scaffold0041 (1 HSPs)
scaffold0041 (41-105)||(34411-34475)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 22212255 - 22212324
Alignment:
Q  130 tagcccctttggcttaaatatgcaggatcaacctgcgatttttcggctggttgcaggccgtcctttgggt 199  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  22212255 tagcccctttggcttaaatatgcaggatcagcctgcgatttttcggctggttgcaggccatcctttgggt 22212324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 40380346 - 40380280
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  40380346 atgtgagtatgagagagaaagttgtacaaaagttgtcataaaatagatgtacaaatatcatttctct 40380280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 9985682 - 9985749
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||| ||| ||  ||||||||||||||||| ||||||||||||||||||||    
T  9985682 taatgtgagtatgagagagaatgttgtataaaagttgtcataaaatagatgtacaaatatcatttctc 9985749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 9314476 - 9314411
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||| ||| |||||||| ||| ||| ||||||||||||  ||||||||||||||||||||    
T  9314476 atgtgagtatgagagagaaggttgtacaaaaattgtcataaaatggatgtacaaatatcatttctc 9314411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 13884164 - 13884231
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||| ||| |  ||||||||||| ||||| | |||||||||||||||||||    
T  13884164 taatgtgagtatgagagagaaagttgtcacaaagttgtcaaaaaatgattgtacaaatatcatttctc 13884231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 20995062 - 20995128
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttct 107  Q
    |||||| ||||| ||| |||||||| ||| ||| ||||||||||||  ||||| |||||||||||||    
T  20995062 taatgtaagtatgagagagaaggttgtacaaaaattgtcataaaatggatgtataaatatcatttct 20995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 30136049 - 30136087
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  30136049 aaagttgtcattaaataaatgttcaaatatcatttctct 30136087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 40413372 - 40413410
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  40413372 aaagttgtcacaaaataattgtacaaatatcatttctct 40413410  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 42569751 - 42569789
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  42569751 aaagttgtcataaaatgaatgttcaaatatcatttctct 42569789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 42126 - 42159
Alignment:
Q  74 gttgtcataaaataaatgtacaaatatcatttct 107  Q
    ||||||||||||||| ||||||||||||||||||    
T  42126 gttgtcataaaataattgtacaaatatcatttct 42159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 3207432 - 3207481
Alignment:
Q  58 agaaggttataccaaagttgtcataaaataaatgtacaaatatcatttct 107  Q
    |||||||| ||| |||| |||||||||||  |||||||||||||||||||    
T  3207432 agaaggttgtacaaaaggtgtcataaaatggatgtacaaatatcatttct 3207481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 21467421 - 21467384
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  21467421 aaagttgtcaaaaaataaatgtataaatatcatttctc 21467384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 23709043 - 23708975
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| |||||||||||| ||| |||||| |   |||||   ||||||||||||||||||||    
T  23709043 taatgtgagtatgagatagaaggttgtacaaaagttatacaaaaatggttgtacaaatatcatttctct 23708975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 27630964 - 27630896
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| |   ||| ||||||||||||  |||||||||||||||||||||    
T  27630964 taatgtgagtatgagagagaaagttgtcaaaaaattgtcataaaatggatgtacaaatatcatttctct 27630896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 34972208 - 34972244
Alignment:
Q  68 accaaagttgtcataaaataaatgtacaaatatcatt 104  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  34972208 accaaagttgtcattaaatagatgtacaaatatcatt 34972244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 45108691 - 45108727
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttct 107  Q
    |||||||||| |||||| |||||||||||||||||||    
T  45108691 aaagttgtcaaaaaatagatgtacaaatatcatttct 45108727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 44910764 - 44910696
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| ||||| |||||| |||||| ||||||||| ||||||||||||||||||||||    
T  44910764 taatgtgagtatgagagagaagattatacaaaagttatcataaaatgaatgtacaaatatcatttctct 44910696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 1402717 - 1402650
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||||||| ||| ||||||||||||||||  ||||||||||||||||||||    
T  1402717 taatgtgagtatgagagagaaggttgtacaaaagttgtcataaaatggatgtacaaatatcatttctc 1402650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 34900707 - 34900639
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| | | |||||||| ||| ||||||||||||||||| |||||||| ||||||||||||    
T  34900707 taatgtgagtatgatagagaaggttgtacaaaagttgtcataaaatagatgtacaattatcatttctct 34900639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 29525300 - 29525233
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| ||||  || ||| |||||||||||||||| |||||||||||||||||||||    
T  29525300 taatgtgagtatgagagagaatattgtacaaaagttgtcataaaatgaatgtacaaatatcatttctc 29525233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 20549389 - 20549457
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||| ||| ||| |||| ||||||| ||| || |||||||||| |||||||||||||||||||||    
T  20549389 taatgtgaatatgagagagaatgttatacaaaaattatcataaaatagatgtacaaatatcatttctct 20549457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 49130921 - 49130854
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| | | |||||||| |   ||| ||||||||||||||||||||||||||||||||||    
T  49130921 taatgtgagtatgaaagagaaggttgtcaaaaaattgtcataaaataaatgtacaaatatcatttctc 49130854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 8254092 - 8254026
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| |||||||||||||| |||||   ||||||||||||||||||||    
T  8254092 atgtgagtatgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctct 8254026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 37585498 - 37585429
Alignment:
Q  41 taatgtgagtatcagatagaaggtta-taccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| |||| ||| ||| ||||||||||||| |||||||||||| ||||||||    
T  37585498 taatgtgagtatgagagagaatgttagtacaaaaattgtcataaaatagatgtacaaatataatttctct 37585429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 49417643 - 49417574
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||| |||| ||||||||||||||||    
T  49417643 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctct 49417574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 7218 - 7286
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | | |||||||||| ||||| | ||||||||||||||||||||    
T  7218 taatgtgagtatgagagagaaagttgtccaaaagttgtcagaaaatgattgtacaaatatcatttctct 7286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 44855313 - 44855250
Alignment:
Q  46 tgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||| ||| |||| ||||||| |||||||||| ||||||  | ||||||||||||||||||    
T  44855313 tgagtatgagagagaaagttatacaaaagttgtcacaaaatagttatacaaatatcatttctct 44855250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 1765441 - 1765403
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  1765441 aaagttgtcacaaaatgaatgtacaaatatcatttctct 1765403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 3281738 - 3281776
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  3281738 aaagttgtcacaaaataaatgttcaaatatcatttctct 3281776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 43333704 - 43333742
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  43333704 aaagttgtcataaaatgactgtacaaatatcatttctct 43333742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 46094460 - 46094422
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  46094460 aaagttgtcataaaatgaatgtccaaatatcatttctct 46094422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 50652453 - 50652387
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||||| ||  |||| | ||||||||||||||||   ||||||||||||||||||||    
T  50652453 atgtgagtatgagatataaatttatccaaaagttgtcataaaatggttgtacaaatatcatttctct 50652387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 6999205 - 6999168
Alignment:
Q  72 aagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  6999205 aagttgtcataaaatgaatgttcaaatatcatttctct 6999168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 11327173 - 11327108
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||| ||| |||| ||| ||| |||||||||| |||||   |||||||||||||||||||    
T  11327173 atgtgagtatgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctc 11327108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 14992218 - 14992259
Alignment:
Q  68 accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||| ||||  |||||||||||||||||||||    
T  14992218 accaaagttgtcattaaatggatgtacaaatatcatttctct 14992259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 30567994 - 30568031
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  30567994 aaagttgtcacaaaataaatgttcaaatatcatttctc 30568031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 40499773 - 40499737
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttct 107  Q
    |||||||||||||||||| | ||||||||||||||||    
T  40499773 aaagttgtcataaaataattatacaaatatcatttct 40499737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 41717326 - 41717262
Alignment:
Q  45 gtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||| |||||||| ||| |   ||||||||||  |||||| ||||||||||||||||||||    
T  41717326 gtgagtatgagatagaaagttgtttaaaagttgtcactaaataattgtacaaatatcatttctct 41717262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 55400067 - 55399999
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||  |||| |||||||||||||||    
T  55400067 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 55399999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 10591341 - 10591402
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatca 102  Q
    |||||||||||| ||| |||||||| ||| ||||||||||||||||| ||||||||||||||    
T  10591341 taatgtgagtatgagagagaaggttgtactaaagttgtcataaaatagatgtacaaatatca 10591402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 27704502 - 27704434
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| |||||||||||| ||| ||||||||   ||||||  ||||||||||||||||||||    
T  27704502 taatgtgagtatgagatagaaggttgtacaaaagttgtacaaaaatagttgtacaaatatcatttctct 27704434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 27164843 - 27164909
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||||||| |||||||||| ||| | | ||||||||||||||||||||    
T  27164843 atgtgagtatgagagagaaagttatacaaaagttgtcacaaattgattgtacaaatatcatttctct 27164909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 2347065 - 2347130
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||| ||| |||| ||| |||||||||||||| |||||   |||||||||||||||||||    
T  2347065 atgtgagtatgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 2347130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 11564961 - 11564896
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaa-gttgtcataaaataaatgtacaaatatcattt 105  Q
    |||||||||||| ||| |||| |||||| |||| ||||||| ||||||||||| ||||||||||||    
T  11564961 taatgtgagtatgagagagaaagttatagcaaaagttgtcacaaaataaatgttcaaatatcattt 11564896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 40231709 - 40231777
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| |||| ||||||| | || |||||||||| ||||||| ||||||||||||||||||||    
T  40231709 taatgtgagtatgagatggaaggttgtcacaaaagttgtca-aaaataattgtacaaatatcatttctct 40231777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 46456595 - 46456559
Alignment:
Q  68 accaaagttgtcataaaataaatgtacaaatatcatt 104  Q
    |||||||||||||| ||||||||||||||||||||||    
T  46456595 accaaagttgtcattaaataaatgtacaaatatcatt 46456559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 49025337 - 49025373
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttct 107  Q
    |||||||||||||||||| ||||||||||||||||||    
T  49025337 aaagttgtcataaaataattgtacaaatatcatttct 49025373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 116696 - 116630
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| ||||||||||| || ||||||  |||| |||||||||||||||    
T  116696 atgtgagtatgagagagaaagttgtaccaaagttggcacaaaatagttgtataaatatcatttctct 116630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 28862104 - 28862142
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  28862104 aaagttgtcataaaatggatgtacaaatatcatttctct 28862142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 29162288 - 29162350
Alignment:
Q  46 tgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    ||||||| ||| |||| ||||||| |||||||||| ||| | | |||||||||||||||||||    
T  29162288 tgagtatgagagagaaagttatacaaaagttgtcacaaattgattgtacaaatatcatttctc 29162350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 37385239 - 37385301
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcattt 105  Q
    |||||||||| ||| |||| ||| ||| |||||||||| ||||||  ||||||||||||||||    
T  37385239 atgtgagtatgagagagaaagttgtacaaaagttgtcaaaaaatagttgtacaaatatcattt 37385301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 47078273 - 47078311
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  47078273 aaagttgtcataaaatagatgttcaaatatcatttctct 47078311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 2346984 - 2346951
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatt 104  Q
    |||||||||||||||| |||||||||||||||||    
T  2346984 aaagttgtcataaaatgaatgtacaaatatcatt 2346951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 22638918 - 22638955
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  22638918 aaagttgtcataaaatagatgttcaaatatcatttctc 22638955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 26153683 - 26153646
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||||||||  |||||||||||||||||||    
T  26153683 aaagttgtcataaaatagttgtacaaatatcatttctc 26153646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 33050248 - 33050183
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||| ||| |||| ||| ||| |||||||||| |||||   |||||||||||||||||||    
T  33050248 atgtgagtatgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctc 33050183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 4971357 - 4971289
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| ||  |||||||||| |||||   ||||||||||||||||||||    
T  4971357 taatgtgagtatgagagagaaagttgtataaaagttgtcacaaaatggttgtacaaatatcatttctct 4971289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 7990146 - 7990078
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| ||||  ||||   ||| || |||||||||| |||||||||||||||||||||    
T  7990146 taatgtgagtataagagagaaaattatcaaaaaattatcataaaatagatgtacaaatatcatttctct 7990078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 28548225 - 28548293
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| ||| ||||||||   ||||||  ||||||||||||||||||||    
T  28548225 taatgtgagtatgagagagaaagttgtacaaaagttgtaccaaaatagttgtacaaatatcatttctct 28548293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 42060800 - 42060836
Alignment:
Q  68 accaaagttgtcataaaataaatgtacaaatatcatt 104  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  42060800 accaaagttgtcattaaatagatgtacaaatatcatt 42060836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 48639387 - 48639455
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||||||| ||| ||||||||   |||||   ||||||||||||||||||||    
T  48639387 taatgtgagtatgagagagaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctct 48639455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 45521583 - 45521651
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||| ||||||| ||| |||||||| ||| ||||||||||||||||  |||||||||||||||||||||    
T  45521583 taatatgagtatgagagagaaggttgtacaaaagttgtcataaaatggatgtacaaatatcatttctct 45521651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 6126920 - 6126852
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| ||| ||| ||||||||||||| |||||||||||| ||||||||    
T  6126920 taatgtgagtatgagagagaatgttgtacaaaaattgtcataaaatagatgtacaaatatgatttctct 6126852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 36512909 - 36512841
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||||||| |   |||||||| ||||||||||||||||||||| ||||||||    
T  36512909 taatgtgagtatgagagagaaggttgtcaaaaagttgttataaaataaatgtacaaatataatttctct 36512841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 41609683 - 41609751
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| | || ||| ||| ||||||||||||||||  |||||||||||||||||||||    
T  41609683 taatgtgagtatgagagataaagttgtacaaaagttgtcataaaatggatgtacaaatatcatttctct 41609751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 24772738 - 24772671
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||||||| |   ||||||||||||||||  ||||||||||||||||||||    
T  24772738 taatgtgagtatgagagagaaggttgtcaaaaagttgtcataaaatggatgtacaaatatcatttctc 24772671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 3223054 - 3222988
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| ||| |||||||||| ||| | | ||||||||||||||||||||    
T  3223054 atgtgagtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctct 3222988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 36364789 - 36364860
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtc----ataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||||||| ||| |||||||||    |||||||  ||||||||||||||||||||    
T  36364789 taatgtgagtatgagagagaaggttgtacaaaagttgtcataaataaaatggatgtacaaatatcatttctc 36364860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 38864770 - 38864808
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  38864770 aaagttgtcacaaaataattgtacaaatatcatttctct 38864808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 41262652 - 41262690
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  41262652 aaagttgtcacaaaataattgtacaaatatcatttctct 41262690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 44368208 - 44368274
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| ||| |||||||||| ||| | | ||||||||||||||||||||    
T  44368208 atgtgagtataagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctct 44368274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 3475934 - 3475869
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||| ||| ||| |||| ||| ||| ||||||||||||||||   |||||||||||||||||||    
T  3475934 atgtgaatatgagagagaaagttgtacaaaagttgtcataaaatggttgtacaaatatcatttctc 3475869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 17683273 - 17683236
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  17683273 aaagttgtcataaaatgaatgttcaaatatcatttctc 17683236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 56025399 - 56025440
Alignment:
Q  68 accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||| |||| ||||||||||||||||| ||||    
T  56025399 accaaagttgtcattaaatgaatgtacaaatatcattgctct 56025440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 5208331 - 5208399
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| ||| |||||||||| ||| |   ||||||||||||||||||||    
T  5208331 taatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctct 5208399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 8455928 - 8455860
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | | |||||||||| ||||||  |||||||||| |||||||||    
T  8455928 taatgtgagtattagagagaaagttgttcaaaagttgtcacaaaatagttgtacaaataacatttctct 8455860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 24019899 - 24019863
Alignment:
Q  68 accaaagttgtcataaaataaatgtacaaatatcatt 104  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  24019899 accaaagttgtcattaaatagatgtacaaatatcatt 24019863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 30170023 - 30170091
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||| |||| ||||||| |||||||    
T  30170023 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatataatttctc 30170091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 44272814 - 44272882
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| |   |||||||||| ||||||  ||||||||||||||||||||    
T  44272814 taatgtgagtatgagagagaaagttgtttaaaagttgtcaaaaaatagttgtacaaatatcatttctct 44272882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 50291349 - 50291281
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||||||| ||  ||||||||   ||||| | ||||||||||||||||||||    
T  50291349 taatgtgagtatgagagagaaggttgtataaaagttgtacaaaaatgattgtacaaatatcatttctct 50291281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 3366401 - 3366465
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcattt 105  Q
    ||||| |||||||||| |||||||| ||| |||||||| |||||||| |||||||||||||||||    
T  3366401 taatgggagtatcagagagaaggttgtacaaaagttgtaataaaatagatgtacaaatatcattt 3366465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 18508145 - 18508077
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||||||| |||||| |||||||||  |||||||||||||||||||||    
T  18508145 taatgtgagtatgagagagaatgttatacaaaagttatcataaaatggatgtacaaatatcatttctct 18508077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 15141510 - 15141472
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  15141510 aaagttgtcataaaatagatgtacaaatatcatttctct 15141472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 8087408 - 8087372
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttct 107  Q
    |||||||||||||||||| ||||||||||||||||||    
T  8087408 aaagttgtcataaaataattgtacaaatatcatttct 8087372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 23344993 - 23345061
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||| ||| ||| |||||||| |   |||||||| ||||||| ||||||||||||||||||||||    
T  23344993 taatgtgaatatgagagagaaggttgtcaaaaagttgttataaaatgaatgtacaaatatcatttctct 23345061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 14714053 - 14713986
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||| ||| |   ||||||||||||||||  ||||||||||||||||||||    
T  14714053 taatgtgagtatgagagagaatgttgtttaaaagttgtcataaaattgatgtacaaatatcatttctc 14713986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 26206915 - 26206848
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaag-ttgtcataaaataaatgtacaaatatcatttct 107  Q
    |||||||||||| ||| |||| |||||| ||||  ||||||||||||| |||| ||||||||||||||    
T  26206915 taatgtgagtatgagagagaaagttataacaaaaattgtcataaaatagatgttcaaatatcatttct 26206848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 43791823 - 43791870
Alignment:
Q  58 agaaggttataccaaagttgtcataaaataaatgtacaaatatcattt 105  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||||    
T  43791823 agaaggttgtacaaaagttgtcataaaatggatgtacaaatatcattt 43791870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 2013323 - 2013357
Alignment:
Q  75 ttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||||||||||||||||||||||    
T  2013323 ttgtcataaaatgaatgtacaaatatcatttctct 2013357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 27307237 - 27307303
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| ||| |||||||||| ||| | | ||||||||||||||||||||    
T  27307237 atgtgagtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctct 27307303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 29871386 - 29871424
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  29871386 aaagttgtcataaactaattgtacaaatatcatttctct 29871424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 35171232 - 35171298
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| ||||||| |||||| |||||   ||||||||||||||||||||    
T  35171232 atgtgagtatgagagagaaagttgtaccaaaattgtcacaaaatggttgtacaaatatcatttctct 35171298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 36383527 - 36383461
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| ||| |||||||||| |||||   ||||||||||||||||||||    
T  36383527 atgtgagtatgagagagaaagttgtacaaaagttgtcacaaaatctttgtacaaatatcatttctct 36383461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 3196093 - 3196158
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||| ||| |||| ||| ||| |||||||||| ||| | | |||||||||||||||||||    
T  3196093 atgtgagtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 3196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 11548069 - 11548102
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatt 104  Q
    |||||||||||||||||| |||||||||||||||    
T  11548069 aaagttgtcataaaataattgtacaaatatcatt 11548102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 43725253 - 43725216
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||||| || ||||||||||||||||||||    
T  43725253 aaagttgtcataaagtagatgtacaaatatcatttctc 43725216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 44050083 - 44050014
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||||||| | || ||||||||||||||||   ||||||| ||||||||||||    
T  44050083 taatgtgagtatgagagagaaggttgtcacaaaagttgtcataaaatggttgtacaagtatcatttctct 44050014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 45372605 - 45372642
Alignment:
Q  68 accaaagttgtcataaaataaatgtacaaatatcattt 105  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  45372605 accaaagttgtcattaaatgaatgtacaaatatcattt 45372642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 6999071 - 6999139
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||  |||| |||||||||||||||    
T  6999071 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 6999139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 12175256 - 12175220
Alignment:
Q  68 accaaagttgtcataaaataaatgtacaaatatcatt 104  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  12175256 accaaagttatcattaaataaatgtacaaatatcatt 12175220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 12256968 - 12256900
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||||||| ||| |||||| |   ||||| | ||||||||||||||||||||    
T  12256968 taatgtgagtatgagagagaaggttgtacaaaagttatacaaaaatgattgtacaaatatcatttctct 12256900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 2854964 - 2855032
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| | ||| || ||| |||||||||||||||| ||||||||||||||||||||||    
T  2854964 taatgtgagtatgagagaaaagattgtacaaaagttgtcataaaatgaatgtacaaatatcatttctct 2855032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 16234303 - 16234362
Alignment:
Q  46 tgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcattt 105  Q
    ||||||| ||| |||||||||||| ||||||||||||||||  |||||||||||||||||    
T  16234303 tgagtatgagagagaaggttatacaaaagttgtcataaaatggatgtacaaatatcattt 16234362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 34008248 - 34008179
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| |||||||| ||| | || ||||||||||||||||| |||| ||||||||||||||||    
T  34008248 taatgtgagtatgagatagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctct 34008179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 51286370 - 51286439
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | || |||||||||||||||||||||| ||||||||||||||||    
T  51286370 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaataaatgttcaaatatcatttctct 51286439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 17167916 - 17167848
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||| ||||| ||| |||||||| ||  ||||||||||||||||  |||||||||||||||||||||    
T  17167916 taatgttagtatgagagagaaggttgtataaaagttgtcataaaatggatgtacaaatatcatttctct 17167848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 32873408 - 32873340
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||||| ||| || ||| |||||| |||||||||  |||||||||||||||||||||    
T  32873408 taatgtgagtatgagataaaagattgtacaaaagttatcataaaatggatgtacaaatatcatttctct 32873340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 7078506 - 7078572
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| | | |||||||||| |||||| |||||||||||||||||||||    
T  7078506 atgtgagtatgagagagaaagttgttcaaaagttgtcacaaaatagatgtacaaatatcatttctct 7078572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 34395925 - 34395987
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcattt 105  Q
    |||||||||| ||| |||| ||| | | ||||||||||||||||| |||||||||||||||||    
T  34395925 atgtgagtatgagagagaaagttgttcaaaagttgtcataaaatagatgtacaaatatcattt 34395987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 42256525 - 42256459
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| |||||||||||||| |||||   ||||||||||||||||||||    
T  42256525 atgtgagtatgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctct 42256459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 32915075 - 32915144
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||| |||| ||||||||||||||||    
T  32915075 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctct 32915144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 47214276 - 47214207
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||| |||| ||||||||||||||||    
T  47214276 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctct 47214207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 40610296 - 40610228
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||||||| |   ||| |||||||||||| |||||| |||||||||||||||    
T  40610296 taatgtgagtatgagagagaaggttgtcaaaaaattgtcataaaatgaatgtataaatatcatttctct 40610228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 29706708 - 29706775
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaa-gttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| ||||||||||| |||| ||| |||||||||   ||||||||||||||||||||    
T  29706708 atgtgagtatgagagagaaggttataacaaaagttatcataaaatggttgtacaaatatcatttctct 29706775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 29877057 - 29877018
Alignment:
Q  70 caaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  29877057 caaagttgtcattaaataaatgtacaaatatcattgctct 29877018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 5574263 - 5574329
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttct 107  Q
    |||||||||||| ||| |||||||| ||| ||||||||   ||||| | ||||||||||||||||||    
T  5574263 taatgtgagtatgagagagaaggttgtacaaaagttgtacaaaaatgattgtacaaatatcatttct 5574329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 11097890 - 11097956
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| | | |||||||||| |||||  |||||||||||||||||||||    
T  11097890 atgtgagtatgagagagaaagttgttcaaaagttgtcacaaaatggatgtacaaatatcatttctct 11097956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 18610838 - 18610772
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| ||  |||||||||| ||||||  ||||||||||||||||||||    
T  18610838 atgtgagtatgagagagaaagttgtaaaaaagttgtcacaaaatagttgtacaaatatcatttctct 18610772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 24265612 - 24265646
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcattt 105  Q
    |||||||||||||||||| ||||||||||||||||    
T  24265612 aaagttgtcataaaataattgtacaaatatcattt 24265646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 24673106 - 24673068
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  24673106 aaagttgtcataaaatagatgttcaaatatcatttctct 24673068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 29489365 - 29489431
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| |||||||||| ||| |||||   ||||||||||||||||||||    
T  29489365 atgtgagtatgagagagaaagttgtaccaaagttatcacaaaatggttgtacaaatatcatttctct 29489431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 35883641 - 35883679
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  35883641 aaagttgtcaaaaaataattgtacaaatatcatttctct 35883679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 37588709 - 37588747
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  37588709 aaagttgtcacaaaataaatgttcaaatatcatttctct 37588747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 10890049 - 10890118
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||  |||| ||||||||||||||||    
T  10890049 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 10890118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 15705065 - 15705134
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||  |||| ||||||||||||||||    
T  15705065 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 15705134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 34254386 - 34254423
Alignment:
Q  72 aagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  34254386 aagttgtcataaaatgaatgttcaaatatcatttctct 34254423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 46948018 - 46947981
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  46948018 aaagttgtcataaaatggatgtacaaatatcatttctc 46947981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 52362550 - 52362481
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||  |||| ||||||||||||||||    
T  52362550 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 52362481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 12999826 - 12999894
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| ||| |||||||| | |||||   ||||||||||||||||||||    
T  12999826 taatgtgagtatgagagagaaagttgtacaaaagttgttagaaaatggttgtacaaatatcatttctct 12999894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 13489730 - 13489662
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||  |||| |||||||||||||||    
T  13489730 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 13489662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 21854468 - 21854536
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||| ||||||| ||| |||| ||| ||| ||||||||   ||||||| ||||||||||||||||||||    
T  21854468 taatatgagtatgagagagaaagttgtacaaaagttgtaccaaaataattgtacaaatatcatttctct 21854536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 37843436 - 37843504
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| |  ||||||||||| ||| ||  ||||||||||||||||||||    
T  37843436 taatgtgagtatgagagagaaagttgtcacaaagttgtcaaaaagtagttgtacaaatatcatttctct 37843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 45008168 - 45008236
Alignment:
Q  42 aatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||||||| ||| |||| ||||| || |||||||||| ||||||| |||  |||||||||||||||    
T  45008168 aatgtgagtatgagagagaaagttattacaaaagttgtcacaaaataattgttgaaatatcatttctct 45008236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 204451 - 204517
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| |||  ||||||| ||| |||||||||| |||||| |||||||||||||||||||||    
T  204451 taatgtgagtatgaga--gaaggttgtacaaaagttgtcagaaaatagatgtacaaatatcatttctct 204517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 4820222 - 4820155
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||| ||||||| ||| |||||||| ||| |||| |||||||||||  ||||||||||||||||||||    
T  4820222 taatatgagtatgagagagaaggttgtacaaaagatgtcataaaatggatgtacaaatatcatttctc 4820155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 15917999 - 15918061
Alignment:
Q  46 tgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    ||||||| ||| | || ||||||| |||||||||| ||| ||| |||||||||||||||||||    
T  15917999 tgagtatgagagataaagttatacaaaagttgtcacaaattaattgtacaaatatcatttctc 15918061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 22402660 - 22402698
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  22402660 aaagttgtcacaaaataaatgttcaaatatcatttctct 22402698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 34400685 - 34400619
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttct 107  Q
    |||||||||||| ||| |||||||| |   ||| |||||||||||| | ||||||||||||||||||    
T  34400685 taatgtgagtatgagagagaaggttgttaaaaaattgtcataaaatgattgtacaaatatcatttct 34400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 9933537 - 9933500
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  9933537 aaagttgtcataaaatgaatgttcaaatatcatttctc 9933500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 19839989 - 19840058
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | || ||| |||||||||||| ||||| ||||||||||||||||    
T  19839989 taatgtgagtatgagagagaaagttgtcacaaaaattgtcataaaatgaatgttcaaatatcatttctct 19840058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 19983874 - 19983841
Alignment:
Q  75 ttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||||| |||||||||||||||||||    
T  19983874 ttgtcataaaataattgtacaaatatcatttctc 19983841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 35814517 - 35814452
Alignment:
Q  44 tgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||||| ||| |||| ||| |||||||||| ||| |||||   ||||||||||||||||||||    
T  35814517 tgtgagtatgagaaagaaagttgtaccaaagttatcacaaaatggttgtacaaatatcatttctct 35814452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 125159 - 125091
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| |||||   |||||||||| ||| ||  ||||||||||||||||||||    
T  125159 taatgtgagtattagaaagaaagttatcaaaaagttgtcacaaagtagttgtacaaatatcatttctct 125091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 6517780 - 6517712
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||  |||| |||||||||||||||    
T  6517780 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 6517712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 10372218 - 10372182
Alignment:
Q  68 accaaagttgtcataaaataaatgtacaaatatcatt 104  Q
    |||||||||||||| |||| |||||||||||||||||    
T  10372218 accaaagttgtcattaaatgaatgtacaaatatcatt 10372182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 11880991 - 11881059
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| |   |||||||| | ||||||| ||||||||||||||||||||    
T  11880991 taatgtgagtatgagagagaaagttgtctaaaagttgttaaaaaataattgtacaaatatcatttctct 11881059  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 24329986 - 24330054
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||| ||||||| ||| |||| ||| ||| ||||||||   ||||||| ||||||||||||||||||||    
T  24329986 taatatgagtatgagagagaaagttgtacaaaagttgtaccaaaataattgtacaaatatcatttctct 24330054  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 27334923 - 27334857
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| |||  ||| ||||||| |||||||||| ||||||  ||||||||||||||||||||    
T  27334923 atgtgagtatgagaaggaaagttatacaaaagttgtcacaaaatagttgtacaaatatcatttctct 27334857  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 27395663 - 27395597
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| |||  ||| ||||||| |||||||||| ||||||  ||||||||||||||||||||    
T  27395663 atgtgagtatgagaaggaaagttatacaaaagttgtcacaaaatagttgtacaaatatcatttctct 27395597  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 15722507 - 15722575
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||||||| |   |||||||||| ||||| | ||||||||||||||||||||    
T  15722507 taatgtgagtatgagagagaaggttgtcaaaaagttgtcacaaaatgattgtacaaatatcatttctct 15722575  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 34792088 - 34792021
Alignment:
Q  42 aatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    ||||||||||| ||| |||||||| ||| ||||||||   ||||| | ||||||||||||||||||||    
T  34792088 aatgtgagtatgagagagaaggttgtacaaaagttgtacaaaaatgattgtacaaatatcatttctct 34792021  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 2943479 - 2943445
Alignment:
Q  75 ttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||||||| ||||||||||||||||    
T  2943479 ttgtcataaaataaatgttcaaatatcatttctct 2943445  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 3339505 - 3339571
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||| ||| |||| ||| ||| |||||||||| |||||   ||||||||||||||||||||    
T  3339505 atgtgagtatgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctct 3339571  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 17902698 - 17902764
Alignment:
Q  43 atgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||| |||| ||| ||  |||||||||||||| ||  | ||||||||||||||||||    
T  17902698 atgtgagtatcagagagaaagttgtataaaagttgtcataaattagttatacaaatatcatttctct 17902764  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 30906697 - 30906735
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  30906697 aaagttgtcataaaatgaatgtagaaatatcatttctct 30906735  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 18141304 - 18141373
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | || |||||||||||||||| |||||  |||||||||||||||    
T  18141304 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatgaatgtttaaatatcatttctct 18141373  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 20822871 - 20822940
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||  |||| ||||||||||||||||    
T  20822871 taatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctct 20822940  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 25924792 - 25924751
Alignment:
Q  68 accaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||| |||| ||||||||||||||||| ||||    
T  25924792 accaaagttgtcattaaatgaatgtacaaatatcattgctct 25924751  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 32729956 - 32729888
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||| ||  |||||||||| |||||   ||||||||||||||||||||    
T  32729956 taatgtgagtatgagagagaaagttgtataaaagttgtcagaaaatggttgtacaaatatcatttctct 32729888  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 35213564 - 35213632
Alignment:
Q  41 taatgtgagtatcagatagaaggttat-accaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||| ||| | || |||||||||| |||||| |||| |||||||||||||||    
T  35213564 taatgtgagtatgagagagaaagttgttacaaaagttgtcacaaaatagatgttcaaatatcatttctc 35213632  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 337185 - 337117
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| ||| |||| ||||| | |||||||||| |||||   ||||||||||||||||||||    
T  337185 taatgtgagtatgagagagaaagttattcaaaagttgtcagaaaatggttgtacaaatatcatttctct 337117  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 6494 - 6427
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctc 108  Q
    |||||||||||| ||| |||| ||| |   ||||||||||||||||  ||||||||||||||||||||    
T  6494 taatgtgagtatgagagagaatgttgtcaaaaagttgtcataaaatggatgtacaaatatcatttctc 6427  T

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Target: scaffold0221 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 8251 - 8213
Alignment:
Q  71 aaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  8251 aaagttgtcataaaatgaatgttcaaatatcatttctct 8213  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 4382 - 4314
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcatttctct 109  Q
    |||||||||||| |||||||| ||| |   |||||| |||||||||   ||||||||||||||||||||    
T  4382 taatgtgagtatgagatagaaagttgtcaaaaagttatcataaaatggttgtacaaatatcatttctct 4314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 34475 - 34411
Alignment:
Q  41 taatgtgagtatcagatagaaggttataccaaagttgtcataaaataaatgtacaaatatcattt 105  Q
    |||||||||||| ||| |||| ||| |  ||||||||||| ||||||  ||||||||||||||||    
T  34475 taatgtgagtatgagagagaaagttgtcacaaagttgtcaaaaaatagttgtacaaatatcattt 34411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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