View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1860_low_56 (Length: 219)

Name: NF1860_low_56
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1860_low_56
NF1860_low_56
[»] chr6 (3 HSPs)
chr6 (1-204)||(3422346-3422549)
chr6 (100-192)||(22960019-22960111)
chr6 (100-192)||(23828281-23828373)
[»] chr7 (2 HSPs)
chr7 (87-192)||(19542301-19542405)
chr7 (96-168)||(38213229-38213301)
[»] chr2 (2 HSPs)
chr2 (137-197)||(12270313-12270373)
chr2 (134-193)||(28553159-28553218)
[»] chr8 (1 HSPs)
chr8 (95-194)||(15709974-15710073)
[»] chr1 (1 HSPs)
chr1 (97-197)||(39421760-39421860)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 3422549 - 3422346
Alignment:
Q  1 actcccaaataatgtgagacttctaaggtgtacaagaatggttggcccccaaacgaggctaaaagagattacagactcgattctcggtgaagccatcaat 100  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  3422549 actctcaaataatgtgagacttctaaggtgtacaagaacggttggcccccaaacgaggctaaaagagattagagactcgatcctcagtgaagccatcaat 3422450  T
Q  101 gttccgttccactctcaagtatgtcacaatgtgttctgaggtattgtccgttttaggtgtaagtccttcacaattttgtcctttataaaaggcgtctcat 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3422449 gttccgttccactctcaagtatgttacaatgtgttctgaggtattgtccgttttaggtgtaagtccttcacgattttgtcctttataaaaggcgtctcat 3422350  T
Q  201 tagt 204  Q
    ||||    
T  3422349 tagt 3422346  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 22960019 - 22960111
Alignment:
Q  100 tgttccgttccactctcaagtatgtcacaatgtgttctgaggtattgtccgttttaggtgtaagtccttcacaattttgtcctttataaaagg 192  Q
    |||||||||||| || |||||||| |||| || |||| ||  ||||||| | |||  || ||| || |||||||||||||||||||| |||||    
T  22960019 tgttccgttccaatcacaagtatgccacactgcgttcagaaatattgtctgctttgagtttaaatcattcacaattttgtcctttatgaaagg 22960111  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 23828373 - 23828281
Alignment:
Q  100 tgttccgttccactctcaagtatgtcacaatgtgttctgaggtattgtccgttttaggtgtaagtccttcacaattttgtcctttataaaagg 192  Q
    |||||||||||| || |||||||| |||| || |||| ||  ||||||| | |||  || ||| || |||||||||||||||||||| |||||    
T  23828373 tgttccgttccaatcacaagtatgccacactgcgttcagaaatattgtctgctttgagtttaaatcattcacaattttgtcctttatgaaagg 23828281  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 19542405 - 19542301
Alignment:
Q  87 gtgaagccatcaatgttccgttccactctcaagtatgtcacaatgtgttctgaggtattgtccgttttaggtgtaagtccttcacaattttgtcctttat 186  Q
    |||||| || ||||||| ||||||||  | |||||||||||| || |||| ||| |||| |||| ||||| |||||| |||||| | |||| ||||||||    
T  19542405 gtgaagtcaccaatgtttcgttccaccttaaagtatgtcacactgcgttc-gagatattatccgctttagatgtaagcccttcatagttttatcctttat 19542307  T
Q  187 aaaagg 192  Q
    ||||||    
T  19542306 aaaagg 19542301  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 38213229 - 38213301
Alignment:
Q  96 tcaatgttccgttccactctcaagtatgtcacaatgtgttctgaggtattgtccgttttaggtgtaagtcctt 168  Q
    |||||||| | ||||||||||| | ||||||||  ||||||  |||||||||| ||||| |||| ||||||||    
T  38213229 tcaatgtttcattccactctcaggcatgtcacaccgtgttccaaggtattgtctgttttgggtgcaagtcctt 38213301  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 12270313 - 12270373
Alignment:
Q  137 tgaggtattgtccgttttaggtgtaagtccttcacaattttgtcctttataaaaggcgtct 197  Q
    ||||||||||||| |||||| |||||   ||||||  ||||||||||||||||||||||||    
T  12270313 tgaggtattgtccattttagatgtaaactcttcacggttttgtcctttataaaaggcgtct 12270373  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 28553218 - 28553159
Alignment:
Q  134 ttctgaggtattgtccgttttaggtgtaagtccttcacaattttgtcctttataaaaggc 193  Q
    |||| ||||||||| || ||| |||||||||| |||||| ||||||||||| ||||||||    
T  28553218 ttctaaggtattgttcgctttgggtgtaagtctttcacagttttgtcctttttaaaaggc 28553159  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 15710073 - 15709974
Alignment:
Q  95 atcaatgttccgttccactctcaagtatgtcacaatgtgttctgaggtattgtccgttttaggtgtaagtccttcacaattttgtcctttataaaaggcg 194  Q
    |||| |||||| |||||| |||||||| | |||| || |||| ||||||||||||| ||| | |||||| |||||||  | ||  |||||||||||||||    
T  15710073 atcactgttcccttccaccctcaagtacgccacactgcgttccgaggtattgtccgctttggatgtaagcccttcacggtgtttccctttataaaaggcg 15709974  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 39421760 - 39421860
Alignment:
Q  97 caatgttccgttccactctcaagtatgtcacaatgtgttctgaggtattgtccgttttaggtgtaagtccttcacaattttgtcctttataaaaggcgtc 196  Q
    |||||||||||| ||| |||||||| ||||||  ||||||  ||||||||| | |||| |||| ||   |||||| ||||||| || ||||||||| |||    
T  39421760 caatgttccgtttcaccctcaagtaagtcacaccgtgttcataggtattgttcattttgggtggaaactcttcacgattttgttctatataaaaggtgtc 39421859  T
Q  197 t 197  Q
    |    
T  39421860 t 39421860  T

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