View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1860_low_57 (Length: 218)

Name: NF1860_low_57
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1860_low_57
NF1860_low_57
[»] chr1 (3 HSPs)
chr1 (18-206)||(40795658-40795846)
chr1 (18-205)||(41670290-41670477)
chr1 (36-106)||(29391455-29391525)
[»] chr4 (11 HSPs)
chr4 (17-124)||(34662241-34662348)
chr4 (17-124)||(26433995-26434102)
chr4 (17-127)||(23402042-23402152)
chr4 (17-124)||(23885798-23885905)
chr4 (17-124)||(26435775-26435882)
chr4 (17-124)||(26832706-26832813)
chr4 (18-127)||(23868700-23868809)
chr4 (17-121)||(23415909-23416013)
chr4 (17-124)||(23453572-23453679)
chr4 (17-127)||(23408740-23408850)
chr4 (18-124)||(24307194-24307300)
[»] chr7 (1 HSPs)
chr7 (18-128)||(40180471-40180581)
[»] chr8 (1 HSPs)
chr8 (18-119)||(29684676-29684777)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 40795846 - 40795658
Alignment:
Q  18 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 117  Q
    |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40795846 cccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 40795747  T
Q  118 tcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcatctca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40795746 tcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcttctca 40795658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 41670477 - 41670290
Alignment:
Q  18 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  41670477 cccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttct 41670378  T
Q  118 tcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcatctc 205  Q
    ||||||||||||  ||||| |||||||||||||||||||| || ||||||||||||||||| || || || |||||||||||| ||||    
T  41670377 tcttcttgtcggtggaggatgcttcctttgggatcttcttttcggctttggttttctctgctggcgccttctctgctggcttcttctc 41670290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 29391525 - 29391455
Alignment:
Q  36 ataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttctt 106  Q
    ||||| || |||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||    
T  29391525 atacctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttcaacgctcttctt 29391455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 34662241 - 34662348
Alignment:
Q  17 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 116  Q
    |||||| || |||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  34662241 acccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttc 34662340  T
Q  117 ttcttctt 124  Q
    ||||||||    
T  34662341 ttcttctt 34662348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 26434102 - 26433995
Alignment:
Q  17 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 116  Q
    |||||| || |||||||||||||| ||||| |||||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| |||||||     
T  26434102 acccatggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttc 26434003  T
Q  117 ttcttctt 124  Q
    ||||||||    
T  26434002 ttcttctt 26433995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 23402152 - 23402042
Alignment:
Q  17 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 116  Q
    |||||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||||||  |||||||  |||||||     
T  23402152 acccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttc 23402053  T
Q  117 ttcttcttgtc 127  Q
    |||||||||||    
T  23402052 ttcttcttgtc 23402042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 23885905 - 23885798
Alignment:
Q  17 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 116  Q
    |||||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||| |||||||     
T  23885905 acccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttc 23885806  T
Q  117 ttcttctt 124  Q
    ||||||||    
T  23885805 ttcttctt 23885798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 26435882 - 26435775
Alignment:
Q  17 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 116  Q
    |||||| || |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| |||||||     
T  26435882 acccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttc 26435783  T
Q  117 ttcttctt 124  Q
    ||||||||    
T  26435782 ttcttctt 26435775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 26832813 - 26832706
Alignment:
Q  17 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 116  Q
    |||||| || |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| |||||||     
T  26832813 acccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttc 26832714  T
Q  117 ttcttctt 124  Q
    ||||||||    
T  26832713 ttcttctt 26832706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 23868809 - 23868700
Alignment:
Q  18 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 117  Q
    ||||| || |||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||| ||||||| |    
T  23868809 cccatggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttct 23868710  T
Q  118 tcttcttgtc 127  Q
    ||||||||||    
T  23868709 tcttcttgtc 23868700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 23415909 - 23416013
Alignment:
Q  17 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 116  Q
    |||||| ||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||| |||||||     
T  23415909 acccatggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttc 23416008  T
Q  117 ttctt 121  Q
    |||||    
T  23416009 ttctt 23416013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 23453572 - 23453679
Alignment:
Q  17 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 116  Q
    |||||| ||||||||||||||||| ||||| || ||||| || || ||||| |||||||||||||||||||| ||||||||  |||||||| |||||||     
T  23453572 acccatggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctacattcttcttgcttctcttc 23453671  T
Q  117 ttcttctt 124  Q
    ||||||||    
T  23453672 ttcttctt 23453679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 23408740 - 23408850
Alignment:
Q  17 acccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttt 116  Q
    |||||| || |||||||||||||| ||||| || ||||| || || ||||| |||||||||||||||||||| ||||||||  |||||||  |||||||     
T  23408740 acccatcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttc 23408839  T
Q  117 ttcttcttgtc 127  Q
    |||||||||||    
T  23408840 ttcttcttgtc 23408850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 24307300 - 24307194
Alignment:
Q  18 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 117  Q
    ||||| || |||||||||||||| ||||| || ||||| || || |||||||||||||| ||||||||||| ||||| ||  |||||||| ||||||| |    
T  24307300 cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttcaacattcttcttgcttctcttct 24307201  T
Q  118 tcttctt 124  Q
    |||||||    
T  24307200 tcttctt 24307194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 40180471 - 40180581
Alignment:
Q  18 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 117  Q
    ||||||||||||||||| | |||||| |||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| |||||  ||||||| |    
T  40180471 cccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttcaacgcttttcttcgttctcttct 40180570  T
Q  118 tcttcttgtcg 128  Q
    |||||||||||    
T  40180571 tcttcttgtcg 40180581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 29684777 - 29684676
Alignment:
Q  18 cccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttt 117  Q
    |||||||| || ||||| | ||| ||| |||||||||| || |||||||||||||| || || |||||||||||||| | ||| |||||   ||||||||    
T  29684777 cccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaaccttgaatatatatatcttgtaggtttcaatgcttttctttgatctctttt 29684678  T
Q  118 tc 119  Q
    ||    
T  29684677 tc 29684676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University