View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_59 (Length: 211)
Name: NF1860_low_59
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_59 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 6359425 - 6359635
Alignment:
| Q |
1 |
ccagtcactcaaattcacgagtaaaatttatcctgcctggtgtattcatatgaacactttgttccttgtatatgacctgaccggcttcaatgacacaaag |
100 |
Q |
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| T |
6359425 |
ccagtcactcaaattcacaagtaaaatttatcctgcctggtgtattcatataaacgctttgttccttgtatatgacctgaccggcttcaatgacacaaag |
6359524 |
T |
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| Q |
101 |
gcttgtcccatcaaaactgatcaaaatttcaattcttagattaggcaagatcaacttatattcaactaatattccaagctctttctagcgaacatttttg |
200 |
Q |
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| T |
6359525 |
gcttgtcccatcaaaactgatcaaaatttcaattcttagattaggcaagatcaacttatattcaactaatattccaagctctttctagcgaacatttttg |
6359624 |
T |
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| Q |
201 |
cactgacctcc |
211 |
Q |
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| T |
6359625 |
gaatgacctcc |
6359635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 6360777 - 6360732
Alignment:
| Q |
87 |
tcaatgacacaaaggcttgtcccatcaaaactgatcaaaatttcaa |
132 |
Q |
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| T |
6360777 |
tcaatggcacaaaggcgtgttccatcaaaactgatcaaaatttcaa |
6360732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 45187343 - 45187477
Alignment:
| Q |
28 |
ttatcctgcctggtgtattcatatgaacactttgttccttgtatatgacctgaccggcttcaatga---cacaaaggcttgtcccatcaaaactgatcaa |
124 |
Q |
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| T |
45187343 |
ttatccagcctggcgtgttcagatgaatgctttgttcattggatatgaccttaccgacttcattgatggcacaaaggtgtgttccgtcaaaacagatcca |
45187442 |
T |
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| Q |
125 |
aatttcaattcttagattaggcaagatcaacttat |
159 |
Q |
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| T |
45187443 |
aatttcaactattggatcaggcaagatcaacttat |
45187477 |
T |
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