View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_6 (Length: 471)
Name: NF1860_low_6
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 29 - 454
Target Start/End: Complemental strand, 3018022 - 3017603
Alignment:
| Q |
29 |
tgtttactttttcactcctttattacttaannnnnnnnnnnnnattgaaacaagtacccaccacacacgttatctttccttcannnnnnnng-gattcat |
127 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
3018022 |
tgtttactttttcactcctttattacttaatttttatttttttattgaaacaaatacccaccacacacattatctttccttcattttttttttgattcat |
3017923 |
T |
|
| Q |
128 |
tgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataaagc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3017922 |
tgatttggtggaccatacaaatacacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagc |
3017823 |
T |
|
| Q |
228 |
ttaccattcttccttcttccttcttttaaccgaaccaccattttaggtgcgaatctgagccccattttcactgatcaaacaaaataagatcgttttcttc |
327 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017822 |
ttaccattcttccttctta-------taaccgaaccaccattttaggtgcgaatctgagccccattttcactgatcaaacaaaataagatcgttttcttc |
3017730 |
T |
|
| Q |
328 |
atcccctcaacaagagctttctattggtccctttagtttcacaaaaggacaannnnnnncgtgacccatttccccgccgccatgcaatcatacatagcca |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
3017729 |
atcccctcaacaagagctttctattggtccctttagtttcacaaaaggacaatttttttcgtgacccatttccccgccgccgtgcaatcatacatagcca |
3017630 |
T |
|
| Q |
428 |
ccgtgccggagtttgcagctccattgt |
454 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
3017629 |
ccgtgccggagtttgcagctccattgt |
3017603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 451
Target Start/End: Complemental strand, 34344325 - 34343882
Alignment:
| Q |
10 |
gcagagagtacagaccatttgtttactttttcactcctttattacttaannnnnnnnnnnnnattgaaacaagtacccaccacacacgttatctttcctt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| || |||| ||||||||||||||||||| |
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| T |
34344325 |
gcagagagtacagaccatttgtttactttttcactattttattgcttaatttttatttttttattgaaacaaatatccacaacacacgttatctttcctt |
34344226 |
T |
|
| Q |
110 |
cannnnnnnn-ggattcattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacaca |
208 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34344225 |
catttttttttggattcattgatttggtggaccatacaaatacacacattagaacattttattttatcacttgttatctctccaaagtccaaagaacaca |
34344126 |
T |
|
| Q |
209 |
agtccaaaactcataaagcttaccattcttccttcttccttcttttaaccgaaccaccattttaggtgcgaatctgagccccattttcactgatcaaaca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34344125 |
agtccaaaactcataaagcttaccattcttccttcttccttcttacaaccgaaccaccattttaggtgcgaatctgagccccattttcactgatcaaaca |
34344026 |
T |
|
| Q |
309 |
aaataagatcgttttcttcatcccctcaacaagagctttctattggtccctttagtttcacaaaaggacaannnnnnncgtgacccattt-ccccgccgc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
34344025 |
aaataagatcgttttcttcatcccctcaacaatagctttctattggtccctttagtttcaccaaaggacaatttttttcgtgacccatttcccccgccgc |
34343926 |
T |
|
| Q |
408 |
catgcaatcatacatagccaccgtgccggagtttgcagctccat |
451 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||||||||||| |
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|
| T |
34343925 |
tgtgcaatcatacatagtcaccgcgccagagtttgcagctccat |
34343882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 18913128 - 18913195
Alignment:
| Q |
126 |
attgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaa |
193 |
Q |
| |
|
||||| |||||||||| |||||||||||| || |||| || | ||||| |||||||||||||||||| |
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|
| T |
18913128 |
attgagttggtggaccttacaaatacacatatcacaaccttatcttttaccacttgttatctctccaa |
18913195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 150 - 454
Target Start/End: Original strand, 46420229 - 46420533
Alignment:
| Q |
150 |
acacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt |
249 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46420229 |
acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt |
46420328 |
T |
|
| Q |
250 |
cttttaaccgaaccaccattttaggtgcgaatctgagccccattttcactgatcaaacaaaataagatcgttttcttcatcccctcaacaagagctttct |
349 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46420329 |
cttataaccgaaccaccattttaggtgcgaatctgagccccattttcactgatcaaagaaaataagatcgttttcttcatcccctcaacaagagctttct |
46420428 |
T |
|
| Q |
350 |
attggtccctttagtttcacaaaaggacaannnnnnncgtgacccatttccccgccgccatgcaatcatacatagccaccgtgccggagtttgcagctcc |
449 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| |
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|
| T |
46420429 |
attggtccctttagtttcaccaaaggacaatttttttcgtgacccatttccccgccgccgtgtaatcatacatagccaccgcgccggagtttgcagctcc |
46420528 |
T |
|
| Q |
450 |
attgt |
454 |
Q |
| |
|
||||| |
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|
| T |
46420529 |
attgt |
46420533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 46420152 - 46420196
Alignment:
| Q |
14 |
agagtacagaccatttgtttactttttcactcctttattacttaa |
58 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
46420152 |
agagtacataccatttgtttactttttcactcctttattgcttaa |
46420196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 237 - 454
Target Start/End: Original strand, 37278789 - 37279008
Alignment:
| Q |
237 |
ttccttcttccttcttttaaccgaaccaccattttaggtgcgaatctgagccccattttcactgatcaaacaaaataagatcgttttcttcatcccctca |
336 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
37278789 |
ttccttcttccttcttataaccgaaccaccatttttggtgcaaatttgagccccattttcactgatcaaacaaagtaagatcgttttcttcatcccctca |
37278888 |
T |
|
| Q |
337 |
acaagagctttctattggtccctttagtttcacaaaaggacaannnnnnncgtgacccattt--ccccgccgccatgcaatcatacatagccaccgtgcc |
434 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| | | || | |||||||||||| |||||| || ||||||||||||||||||| | || |
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|
| T |
37278889 |
acgagagctttctattggtccctttagtttcaccacatgaaatttttttgcgtgacccattttcccccgctgcggtgcaatcatacatagccacggctcc |
37278988 |
T |
|
| Q |
435 |
ggagtttgcagctccattgt |
454 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
37278989 |
ggagtttgcagctccattgt |
37279008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 125 - 253
Target Start/End: Original strand, 37278612 - 37278740
Alignment:
| Q |
125 |
cattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataa |
224 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
37278612 |
cattgatttggtggatcatacaaatacacacattacaacattttcttttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataa |
37278711 |
T |
|
| Q |
225 |
agcttaccattcttccttcttccttcttt |
253 |
Q |
| |
|
||||| |||||||||||| |||||||||| |
|
|
| T |
37278712 |
agcttgccattcttcctttttccttcttt |
37278740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 37278504 - 37278551
Alignment:
| Q |
10 |
gcagagagtacagaccatttgtttactttttcactcctttattactta |
57 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
37278504 |
gcagagagtgcaaaccatttgtttactttttcactcttttattgctta |
37278551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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