View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1860_low_7 (Length: 458)
Name: NF1860_low_7
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_7 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr3 (7 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 43056700 - 43057028
Alignment:
| Q |
15 |
atcatcacctaaaccattacaattattttgtaaaccaaaccatatttgatcaggnnnnnnnccattttagacagattgatttatgaaaggnnnnnnnnnn |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43056700 |
atcatcacctaaaccattacaattattttgtaaaccaaaccatatttgatcaggaaaaaaaccattttagacagattgatttatgaaaggaaaaaaaaaa |
43056799 |
T |
|
| Q |
115 |
ttacattgattcacttgagctaagttagatattttctgtagtgaattggccagcccaaggatcaagttagtaaggccaaaacatttgaccttaaaaaatt |
214 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43056800 |
ttacattgattcactttacctaagttagatattttctgtagtgaattggccagcccaaggatcaagttagtaaggccaaaacatttgaccttaaaaaatt |
43056899 |
T |
|
| Q |
215 |
gaacaacattgtatggtgtaaat-aaaatgttgtcgattttttgtcgtactagtaatatttaacttgtttcttttttaatgttttctgagttcattttct |
313 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43056900 |
gaacaacattgtatggtgtaaataaaaatgttgtcgattttctgtcgtactagtaatatttaacttgtttcttttttaatgttttctgagttcattttct |
43056999 |
T |
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| Q |
314 |
tgatattaacgttccatactttttaatcc |
342 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43057000 |
tgatattaacgttccatactttttaatcc |
43057028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 9990729 - 9990776
Alignment:
| Q |
411 |
gtgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
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|||||||| |||||||||||| | |||||||| ||||||||||||||| |
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| T |
9990729 |
gtgacaactttctctcttatactcacattatctttttactttctctct |
9990776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 45420092 - 45420046
Alignment:
| Q |
412 |
tgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
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||||||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
45420092 |
tgacaactttctctctcatattcacattatcattttactttctctct |
45420046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 26469398 - 26469444
Alignment:
| Q |
412 |
tgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
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|
||||||| ||||||||||||||||||||||| ||||| ||||||||| |
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| T |
26469398 |
tgacaactttctctcttatatttacattatctttttattttctctct |
26469444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 44519183 - 44519137
Alignment:
| Q |
412 |
tgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
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|
||||||| |||||||||||| |||||||||| ||||||||||||||| |
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| T |
44519183 |
tgacaactttctctcttatacttacattatctttttactttctctct |
44519137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 5771780 - 5771733
Alignment:
| Q |
411 |
gtgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
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|
|||||||| |||||||| ||| | |||||||||||||||||||||||| |
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| T |
5771780 |
gtgacaactttctctctcatactcacattatcattttactttctctct |
5771733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 50726281 - 50726234
Alignment:
| Q |
411 |
gtgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
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|
|||||||| |||||||| | |||||||||||| ||||||||||||||| |
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| T |
50726281 |
gtgacaactttctctctcacatttacattatctttttactttctctct |
50726234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 4637966 - 4638010
Alignment:
| Q |
414 |
acaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| | ||||||| |
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| T |
4637966 |
acaactttctctcttatatttacattatcatcttattctctctct |
4638010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 9692764 - 9692811
Alignment:
| Q |
411 |
gtgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
| |
|
|||| ||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
9692764 |
gtgataactttctctctcatattcacattatcattttactttctctct |
9692811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 19150351 - 19150305
Alignment:
| Q |
411 |
gtgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||||||||||||||| |
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| T |
19150351 |
gtgacaactttctctctcatatttacattat-attttactttctctct |
19150305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 26550276 - 26550323
Alignment:
| Q |
411 |
gtgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||| |||||||||||||||| |
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| T |
26550276 |
gtgacaactttctctctcatattcacattataattttactttctctct |
26550323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 458
Target Start/End: Original strand, 33939274 - 33939321
Alignment:
| Q |
411 |
gtgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| ||||||||||||||| |
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| T |
33939274 |
gtgacaactttctctctcatattcacattatctttttactttctctct |
33939321 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 4494269 - 4494224
Alignment:
| Q |
411 |
gtgacaaccttctctcttatatttacattatcattttactttctct |
456 |
Q |
| |
|
|||||||| |||||||||||| | |||| ||||||||||||||||| |
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|
| T |
4494269 |
gtgacaactttctctcttatactcacatcatcattttactttctct |
4494224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 456
Target Start/End: Original strand, 46623945 - 46623990
Alignment:
| Q |
411 |
gtgacaaccttctctcttatatttacattatcattttactttctct |
456 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| ||||||||||||| |
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| T |
46623945 |
gtgacaactttctctctgatattcacattatctttttactttctct |
46623990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 420 - 456
Target Start/End: Original strand, 7933960 - 7933996
Alignment:
| Q |
420 |
ttctctcttatatttacattatcattttactttctct |
456 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| |
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|
| T |
7933960 |
ttctctctcatacttacattatcattttactttctct |
7933996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 42174960 - 42175006
Alignment:
| Q |
412 |
tgacaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||||| ||||| |
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| T |
42174960 |
tgacaactttctctctcatatttacattatctttttactttttctct |
42175006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 35634866 - 35634822
Alignment:
| Q |
414 |
acaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
35634866 |
acaactttctctcttatacttacattatctttttagtttctctct |
35634822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 456
Target Start/End: Original strand, 44061756 - 44061801
Alignment:
| Q |
411 |
gtgacaaccttctctcttatatttacattatcattttactttctct |
456 |
Q |
| |
|
|||||||| |||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
44061756 |
gtgacaactttctctctcatactcacattatcattttactttctct |
44061801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 2730990 - 2730946
Alignment:
| Q |
414 |
acaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
2730990 |
acaactttctctctcatattcacattatctttttactttctctct |
2730946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 36660480 - 36660436
Alignment:
| Q |
414 |
acaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
| |
|
||||| |||||||| ||| |||||||||| ||||||||||||||| |
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|
| T |
36660480 |
acaactttctctctcatacttacattatctttttactttctctct |
36660436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 18315977 - 18316021
Alignment:
| Q |
412 |
tgacaaccttctctcttatatttacattatcattttactttctct |
456 |
Q |
| |
|
||||||| |||||||||||| | |||| ||||||||||||||||| |
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|
| T |
18315977 |
tgacaactttctctcttatactcacatcatcattttactttctct |
18316021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 54000740 - 54000784
Alignment:
| Q |
414 |
acaaccttctctcttatatttacattatcattttactttctctct |
458 |
Q |
| |
|
||||| |||||||| ||| | |||||||||||||||||||||||| |
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|
| T |
54000740 |
acaactttctctctcatactcacattatcattttactttctctct |
54000784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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