View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1860_low_8 (Length: 452)
Name: NF1860_low_8
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 188 - 435
Target Start/End: Original strand, 42925281 - 42925521
Alignment:
| Q |
188 |
gttcattatatgctaacacctatatacnnnnnnngaaagctaagcttaggataattttttcattgaatcaattcatcatcatcttcaaatcaattacggg |
287 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
42925281 |
gttcattatatgctaac--ctatatacaaaaaaagaaagctaagcttaggataattttttcattgaatca-----tcatcatcttcaaatcaattactgg |
42925373 |
T |
|
| Q |
288 |
tcgtctggatcttccaagaaaactttccnnnnnnngagcttatatacacattcttcccatcaacccatcataaccttcaaaataagatatatttacataa |
387 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42925374 |
tcgtctggatcttccaagaaaactttccaaaaaaagagcttatatacacgttcttcccatcaacccatcataaccttcaaaataagatatatttacataa |
42925473 |
T |
|
| Q |
388 |
aatgcaatcttgtgaaaccacagacgacaaacccaaaatgaaatcatc |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42925474 |
aatgcaatcttgtgaaaccacagacgacaaacccaaaatgaaatcatc |
42925521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 42925117 - 42925250
Alignment:
| Q |
1 |
tgaaacaaatccattactttaataaatatatatatgcatacactgcatatataatttacataattgaagacattgattttggatcctacaatcacagaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42925117 |
tgaaacaaatccattactttaataaatat--atatgcatacattgcatatataatttacataattgaagacattgattttggatcctacaatcacagaac |
42925214 |
T |
|
| Q |
101 |
ataaaaaacttaaaatatctacatcaccaaggagac |
136 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42925215 |
ataaaaaacttgaaatatctacatcaccaaggagac |
42925250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University