View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1860_low_9 (Length: 435)
Name: NF1860_low_9
Description: NF1860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1860_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 279 - 420
Target Start/End: Complemental strand, 37346261 - 37346120
Alignment:
| Q |
279 |
cataaattatattttattactatttttgtagtattataataaaaagctgtattaatgtttattgaacaaatttatgagaaatcctattgagtttaatatt |
378 |
Q |
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| T |
37346261 |
cataaattatattttattactatttttgtagtattataataaaaagctgtattaatgtttattgaacaaatttatgagaaatcctattgagtttaatatt |
37346162 |
T |
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| Q |
379 |
gttttatattctgagtcaaacaaagaatatattagttttatt |
420 |
Q |
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| T |
37346161 |
gttttatattctgagtcaaacaaagaatatattagttttatt |
37346120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 37346484 - 37346341
Alignment:
| Q |
56 |
gtagctgcttagagagagaagagtttgagtttgctaaattttgtagtacaattagaaaaaggtggtcatggtctttatatttgactagaacatgttgagt |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
37346484 |
gtagctgcttagagagagaagagtttgagtttgctaaattttgtagtacaattagaaaaaggtagtcatggtctttatatttgactaggacatgttgagt |
37346385 |
T |
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| Q |
156 |
caaagtgccagctcacagtaagagtcatttaaacattataatag |
199 |
Q |
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| T |
37346384 |
caaagtgccagctcacagtaagagtcatttaaacattataatag |
37346341 |
T |
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