View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18611_high_3 (Length: 467)
Name: NF18611_high_3
Description: NF18611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18611_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 174 - 448
Target Start/End: Original strand, 4043815 - 4044091
Alignment:
| Q |
174 |
ctttaactttgtcgtatacaaagaaaactcactcgagatagaactcacaccctgt--caaaccattttcttaatagagattagcttatgctaaacaatga |
271 |
Q |
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| T |
4043815 |
ctttatctttgtcgtatacaaagaaaactcactcgagatagaactcaccatgtgtgtccaaccattttcttaacagagattagcttatgctaaacaatga |
4043914 |
T |
|
| Q |
272 |
tcaatacttagtttataaaatgattgatcaatattttgctaacttactccttatggttttatgtaagtgtaggttgttaatatactccttaatattttta |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |
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| T |
4043915 |
tcaatacttagtttataaaatgattgatcaatattttgctaacttactccttatggttttatataagtgtaagttgttaatttactccttaatattttta |
4044014 |
T |
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| Q |
372 |
ggtgggtataaattatcagctatgtatatactccaacaacccgaaccacaatctcacttactctttgttgttaccaa |
448 |
Q |
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| T |
4044015 |
ggtgagtgtaaattatcagctacgtatatactccaacaatccgaaccacaatgtcacttactctatgttgttaccaa |
4044091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 4043351 - 4043487
Alignment:
| Q |
1 |
acaagggtttatatagagcccaaaaggagaaaataattgattgcatcatgtataagtatggaaggaataaatgtggggtttgtcttccattgccatttta |
100 |
Q |
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| T |
4043351 |
acaagggtttatatagagcccaaaaggataaaataattgattgcatcatgtataagtatggaaggaataaatgtggggtatgtcttccattgccatttta |
4043450 |
T |
|
| Q |
101 |
attataatttactgtcaaagttacataatgtaagggg |
137 |
Q |
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| T |
4043451 |
attataatttactgtcaaagttacataatgtaagggg |
4043487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 4043525 - 4043572
Alignment:
| Q |
174 |
ctttaactttgtcgtatacaaagaaaactcactcgagatagaactcac |
221 |
Q |
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| T |
4043525 |
ctttatctttatcgtatacgaagaaaactcactcgagatagaactcac |
4043572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 4043733 - 4043778
Alignment:
| Q |
93 |
ccattttaattataatttactgtcaaagttacataatgtaaggggg |
138 |
Q |
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| T |
4043733 |
ccattttaattataatttaccgtaaaagttacataatgtgaggggg |
4043778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 4043587 - 4043626
Alignment:
| Q |
92 |
gccattttaattataatttactgtcaaagttacataatgt |
131 |
Q |
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| T |
4043587 |
gccattttaaatataatttactgtaaaagttacataatgt |
4043626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 4043670 - 4043716
Alignment:
| Q |
174 |
ctttaactttgtcgtatacaaagaaaactcactcgagatagaactca |
220 |
Q |
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| T |
4043670 |
ctttatctttgtcgtatgcggagaaaactcactcgagatagaactca |
4043716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 7465685 - 7465637
Alignment:
| Q |
338 |
gtgtaggttgttaatatactccttaatatttttaggtgggtataaatta |
386 |
Q |
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| T |
7465685 |
gtgtaggttgctaatttactccttaatatttttaggtgagtataaatta |
7465637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 5815054 - 5815099
Alignment:
| Q |
339 |
tgtaggttgttaatatactccttaatatttttaggtgggtataaat |
384 |
Q |
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| T |
5815054 |
tgtagcttgttaatttactccttagtatttttaggtgggtgtaaat |
5815099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 23630839 - 23630786
Alignment:
| Q |
338 |
gtgtaggttgttaatatactccttaatatttttaggtgggtataaattatcagc |
391 |
Q |
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| T |
23630839 |
gtgtatgttgctaatttactccttaatgtttttaggtgggtgtaaattagcagc |
23630786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 25902859 - 25902811
Alignment:
| Q |
338 |
gtgtaggttgttaatatactccttaatatttttaggtgggtataaatta |
386 |
Q |
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||||||||| |||| ||||||||||||||||||||||| | ||||||| |
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| T |
25902859 |
gtgtaggtttctaatttactccttaatatttttaggtggttgtaaatta |
25902811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 19494311 - 19494255
Alignment:
| Q |
345 |
ttgttaatatactccttaatatttttaggtgggtataaattatcagctatgtatata |
401 |
Q |
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| T |
19494311 |
ttgttaatttacaccttaatttttttaggtgggtgtaaattagcaactatatatata |
19494255 |
T |
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