View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18611_high_7 (Length: 328)
Name: NF18611_high_7
Description: NF18611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18611_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 23432899 - 23433201
Alignment:
| Q |
8 |
atattattctcgaattcagacaatttgtttttcaattcagtaatctctccaacataattcttctcattttcagtcaacatatttttcaattcagcaatct |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23432899 |
atattcttctcgaattcagacaatttgtttttcaattcagtaatctctccaacataattcttctcattttcagtcaacatatttttcaattcagcaatct |
23432998 |
T |
|
| Q |
108 |
ccctaacataagccttgttttcctttaccttatcacctaacttttgccccatgacacaaagatggaaggttgttcgaacagaatttgttaggctagtttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23432999 |
ccctaacataagccttgttttcctttaccttatcacctaacttttgccccatgacacaaagatggaaggttgttcgaacagaatttgttaggctagtttg |
23433098 |
T |
|
| Q |
208 |
gagtactctttctaattccatctccttaactttttcagaaaacttttccttactgaattgcttatcaataaggtctccgaatgggaaattattatcatag |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23433099 |
gagtactctttctaattccatctccttaactttttcaaaaaacttttccttactgaattgcttatcaataaggtctccgaatgggaaattattatcatag |
23433198 |
T |
|
| Q |
308 |
act |
310 |
Q |
| |
|
||| |
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|
| T |
23433199 |
act |
23433201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 23447259 - 23446986
Alignment:
| Q |
8 |
atattattctcgaattcagacaatttgtttttcaattcagtaatctctccaacataattcttctcattttcagtcaacatatttttcaattcagcaatct |
107 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |
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| T |
23447259 |
atattcttctcatattcagacaatttgtttttcaattcagtaatctctccaacataattcttctcattttcagtcaacatttttttcaattctgaaatct |
23447160 |
T |
|
| Q |
108 |
ccctaacataagccttgttttcctttaccttatcacctaacttttgccccatgacacaaagatggaaggttgttcgaacagaatttgttaggctagtttg |
207 |
Q |
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| | |||||||||||||||||||||| | | ||||| |||||||||||||| |||| |||| ||||| | |||||| |||| ||| ||||||||||| |
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| T |
23447159 |
ctccaacataagccttgttttccttttctgtttcaccaaacttttgccccattacacgaagaaggaagatcattcgaatggaatctgtcaggctagtttg |
23447060 |
T |
|
| Q |
208 |
gagtactctttctaattccatctccttaactttttcagaaaacttttccttactgaattgcttatcaataaggt |
281 |
Q |
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|||||| ||||||||| | | ||||||||||||||| ||||||||| | ||||| | |||||| ||||||| |
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| T |
23447059 |
gagtaccctttctaatccaaactccttaactttttcctgaaacttttcgtccctgaaattcttatcgataaggt |
23446986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 23437671 - 23437777
Alignment:
| Q |
197 |
aggctagtttggagtactctttctaattccatctccttaactttttcagaaaacttttccttactgaattgcttatcaataaggtctccgaatgggaaat |
296 |
Q |
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||||||||||||||||| |||| || ||||| ||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||| |
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| T |
23437671 |
aggctagtttggagtacccttttaaagtccatgtccttaaatttttcagcaaacttttccttaatgaaatgcttatcaataaggtctccaaatgggaaat |
23437770 |
T |
|
| Q |
297 |
tattatc |
303 |
Q |
| |
|
|||||| |
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|
| T |
23437771 |
gattatc |
23437777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 299
Target Start/End: Complemental strand, 21138483 - 21138222
Alignment:
| Q |
38 |
ttcaattcagtaatctctccaacataattcttctcattttcagtcaacatatttttcaattcagcaatctccctaacataagccttgttttcctttacct |
137 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| ||||| |||| ||||||||||||||| ||||| | |||||||||||||||||| || || |
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| T |
21138483 |
ttcaattcagtaatctctccgacataattcttttcatattcagacaacttatttttcaattcagtgatctctccaacataagccttgttttctttgactg |
21138384 |
T |
|
| Q |
138 |
tatcacctaacttttgccccatgacacaaagatggaaggttgttcgaacagaatttgttaggctagtttggagtactctttctaattccatctccttaac |
237 |
Q |
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|||| ||||||||| ||||||||||| |||| |||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
21138383 |
tatcccctaactttagccccatgacatgaagaaggaaggttgttcgaacggaatctgtcaggctagtttggagtactctttcaaattccaactccttaac |
21138284 |
T |
|
| Q |
238 |
tttttcagaaaacttttccttactgaattgcttatcaataaggtctccgaatgggaaattat |
299 |
Q |
| |
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||||||| ||||||||||| |||||| ||||||| |||| | ||||||| || ||||||| |
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| T |
21138283 |
tttttcatgaaacttttcctgactgaaatgcttattgataaagcctccgaaaggaaaattat |
21138222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 21138446 - 21138403
Alignment:
| Q |
21 |
attcagacaatttgtttttcaattcagtaatctctccaacataa |
64 |
Q |
| |
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|||||||||| || |||||||||||||| ||||||||||||||| |
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| T |
21138446 |
attcagacaacttatttttcaattcagtgatctctccaacataa |
21138403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 36767230 - 36767142
Alignment:
| Q |
197 |
aggctagtttggagtactctttctaattccatctccttaactttttcagaaaacttttccttactgaattgcttatcaataaggtctcc |
285 |
Q |
| |
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||||| ||||||||| | |||| ||| ||| |||||| ||||||||| | |||||||| |||||| ||||| |||||||||||||| |
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| T |
36767230 |
aggctggtttggagtgccttttcaaatcccaactcctttactttttcatgatacttttccacactgaaatgcttgtcaataaggtctcc |
36767142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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