View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18611_high_8 (Length: 311)

Name: NF18611_high_8
Description: NF18611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18611_high_8
NF18611_high_8
[»] chr4 (2 HSPs)
chr4 (154-290)||(28110915-28111051)
chr4 (2-153)||(40383063-40383213)
[»] chr3 (2 HSPs)
chr3 (154-290)||(24837198-24837334)
chr3 (172-240)||(30871450-30871518)
[»] chr8 (1 HSPs)
chr8 (154-290)||(4028498-4028634)
[»] chr2 (1 HSPs)
chr2 (154-290)||(34326422-34326558)
[»] chr7 (1 HSPs)
chr7 (164-209)||(35052330-35052375)
[»] chr1 (1 HSPs)
chr1 (13-63)||(22793016-22793064)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 154 - 290
Target Start/End: Original strand, 28110915 - 28111051
Alignment:
Q  154 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28110915 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggccca 28111014  T
Q  254 aaaatccaccattaccgcaccaaacacgcttgtggat 290  Q
    |||||||||||||||||||||||||||||||||||||    
T  28111015 aaaatccaccattaccgcaccaaacacgcttgtggat 28111051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 40383063 - 40383213
Alignment:
Q  2 tctgtttatggtttaataattcaagttatcactaatataggaagcatctttgttatttagcataagaagtatcgttttatgtaccttttgtgtataacta 101  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383063 tctgtttatagtttaataattcaagttatcactaacataggaagcatcttt-ttatttagcataagaagtatcgttttatgtaccttttgtgtataacta 40383161  T
Q  102 ttattaatttannnnnnngaatatataaatgtatcaaatactctctccgtct 153  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||    
T  40383162 ttattaatttatttttttgaatatataaatgtatcaaatactctctccgtct 40383213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 154 - 290
Target Start/End: Complemental strand, 24837334 - 24837198
Alignment:
Q  154 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24837334 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccacctaaaaggccca 24837235  T
Q  254 aaaatccaccattaccgcaccaaacacgcttgtggat 290  Q
    |||||||||||||||||||||||||||||||||||||    
T  24837234 aaaatccaccattaccgcaccaaacacgcttgtggat 24837198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 30871518 - 30871450
Alignment:
Q  172 agcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgccca 240  Q
    ||||| |||||||||||||| |||  | |||||||||| | ||||||||||| | ||||||| ||||||    
T  30871518 agcaacgaggctgtcatatattccctgtcaaaacagcaaaacagcagcatacaacagcctcaccgccca 30871450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 154 - 290
Target Start/End: Complemental strand, 4028634 - 4028498
Alignment:
Q  154 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 253  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| || | |||   ||| || |||     
T  4028634 ggtgcaaagaagcaggacagcagtgaggccgtcatatactcctagccaaaaaagcagaacagcagcataccaaagccgcagcacccgcataacagacccc 4028535  T
Q  254 aaaatccaccattaccgcaccaaacacgcttgtggat 290  Q
    |||| ||||||||||||||||| |||| |||| ||||    
T  4028534 aaaaaccaccattaccgcaccagacactcttgcggat 4028498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 154 - 290
Target Start/End: Complemental strand, 34326558 - 34326422
Alignment:
Q  154 ggtgcaaagaagcaggacagcaatgaggctgtcatatactcctagccaaaacagcagagcagcagcataccaaagcctcaacgcccatctaaaaggccca 253  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||| | |||| |||||||||||||||||| || | ||||  ||| || |||     
T  34326558 ggtgcaaagaagcaggacagcagcgaggctgtcatatactcctagccgaaaaatcagaacagcagcataccaaagccgcagcacccacgtaacagacccc 34326459  T
Q  254 aaaatccaccattaccgcaccaaacacgcttgtggat 290  Q
    |||| ||||||||||||||||| |||| |||||||||    
T  34326458 aaaaaccaccattaccgcaccagacactcttgtggat 34326422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 35052330 - 35052375
Alignment:
Q  164 agcaggacagcaatgaggctgtcatatactcctagccaaaacagca 209  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  35052330 agcaggacaacaatgaggctgtcatatactcgtagccaaaacagca 35052375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 22793016 - 22793064
Alignment:
Q  13 tttaataattcaagttatcactaatataggaagcatctttgttatttagca 63  Q
    |||||||||||||||| |||  || ||||||||||||||||||||||||||    
T  22793016 tttaataattcaagttttca--aacataggaagcatctttgttatttagca 22793064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University