View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18611_low_1 (Length: 573)
Name: NF18611_low_1
Description: NF18611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18611_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 21 - 558
Target Start/End: Complemental strand, 37970177 - 37969640
Alignment:
| Q |
21 |
gacacaacctgacggagggtggattaaggagctaatatccgcagatagagagagcgtgatttgcatgccagccatctatcttgtttgtgtgcctatatat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37970177 |
gacacaacctgacggagggtggattaaggagctaatatccgcagatagagagagcgtgatttgcatgccagccatctatcttgtttgtgtgcctatatat |
37970078 |
T |
|
| Q |
121 |
gagtgaaagtaacttaccactctcttctatagatagactggttacggttacttgtcgattagagaaattaccaaatccgactctaaaaagacaaagcata |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37970077 |
gagtgaaagtaacttaccactctcttctatagatagactggttacggttacttgtcgattagaaaaattaccaaatccgactctaaaaagacaaagcata |
37969978 |
T |
|
| Q |
221 |
accattgcccacgccttgtggaacgccaagagaatacctcaaagttccgccaagatcccaaacactgaacaaaaccaccaagccaaactccagtgctatc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37969977 |
accattgcccacgccttgtggaacgccaagagaatacctcaaagttccgccaagatcccaaacactgaacaaaaccaccaagccaaactccagtgctatc |
37969878 |
T |
|
| Q |
321 |
ccggaacacacctccacacgcagtgacgatctgaggtatttaaaatcccttctatgttacatttgaacccatgtccgcgcttggagttttccactcaatc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37969877 |
ccggaacacacctccacacgcagtgacgatctgaggtatttaaaatcccttctatgttacatttgaacccatgtccgcgcttagagttttccactcaatc |
37969778 |
T |
|
| Q |
421 |
cgaatagaagtgtagttacttcgcatgcgggtaacagaaaaatgcaaaatagttaactttttcacccttatgacatctacaactaacattctttgaagtg |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37969777 |
cgaatagaagtgtagttacttcgcatgcgggtaacagaaaaatgcaaaatagttaactttttcacccttatgacatctacaactaacattctttgaagtg |
37969678 |
T |
|
| Q |
521 |
aatttgctttgatcgtcacagttgttgattgacttgat |
558 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
37969677 |
aatttgttttgattgtcacagttgttgattgacttgat |
37969640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University