View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18611_low_10 (Length: 284)
Name: NF18611_low_10
Description: NF18611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18611_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 32989660 - 32989405
Alignment:
| Q |
20 |
ctggtatctccacttcagtatggcgcggtgtaccattgtgcaccgtgcttaagagttgtggcatcttgaaccgtaacagtggggccctctatgtatgttt |
119 |
Q |
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| T |
32989660 |
ctggtatctccacttcagtatggcgtggtgtaccactgtgcaccgtactcaagagttgtggcatcttgaaccgtaacagtggggccctctatgtatgttt |
32989561 |
T |
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| Q |
120 |
tgaaggtgctgaggaactgccaggtggtggtggatccaaatatggaactagtatcacaagggaggttgcattggatccttcccgtgatatcattcttgca |
219 |
Q |
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| T |
32989560 |
tgaaggtgctgaggaacttccaggtggtggtggatccaaatatggaactagtatcacaagggaggttgcattggatccttcccgtgatatcattcttgca |
32989461 |
T |
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| Q |
220 |
tatatgcaaaacggtgacgttttaacaccagatcatggttttcctgttagaattat |
275 |
Q |
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| T |
32989460 |
tatatgcaaaacggtgacgttttaacaccagatcatggttttcctgttagaattat |
32989405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 27 - 266
Target Start/End: Complemental strand, 32961990 - 32961751
Alignment:
| Q |
27 |
ctccacttcagtatggcgcggtgtaccattgtgcaccgtgcttaagagttgtggcatcttgaaccgtaacagtggggccctctatgtatgttttgaaggt |
126 |
Q |
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| T |
32961990 |
ctccacttcagtatggcgtggtgtaccattgagaaccgtgctcaagcgttgtggaatatttaaccgtaaaagtggggccctctatgtatgctttgaaggt |
32961891 |
T |
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| Q |
127 |
gctgaggaactgccaggtggtggtggatccaaatatggaactagtatcacaagggaggttgcattggatccttcccgtgatatcattcttgcatatatgc |
226 |
Q |
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| T |
32961890 |
gctgaggaacttccaggtggtggtggttcaaaatatggaactagtatcctcagcgaggttgcattggatcgcactagcgatatcattttggcgtatatgc |
32961791 |
T |
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| Q |
227 |
aaaacggtgacgttttaacaccagatcatggttttcctgt |
266 |
Q |
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| T |
32961790 |
aaaatggtgaggttttagctcctgatcacggttttcctgt |
32961751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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