View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18611_low_4 (Length: 459)
Name: NF18611_low_4
Description: NF18611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18611_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 32988661 - 32988218
Alignment:
| Q |
1 |
tgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgcttttggtccttggaagttgaagtgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32988661 |
tgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgcttttggtccttggaagttgaagtgttg |
32988562 |
T |
|
| Q |
101 |
gaccttctaggagccaaggatattgctgtacgagcttgggatgagtccctcaacacccaacctcagaacctcatttggaatctcatggcaagtgcacata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32988561 |
gaccttctaggagccaaggatattgctgtacgagcttgggatgagtccctcaacacccaacctcagaacctcatttggaatctcatggcaagtacacata |
32988462 |
T |
|
| Q |
201 |
ctccaaaccttgtaacttagtactagctccggtacaatatataagaaaaaattaagtctacaaaagttaacgtatttggtcttaaatttggttcaaatat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32988461 |
ctccaaaccttgtaacttagtactagctccggtacaatatataagaaaaaattaagtctacaaaagttaacgtatttggtcaaaaatttggttcaaatat |
32988362 |
T |
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| Q |
301 |
atcaatttttattgactgagggcgtaaatcacgttaaaactttgctttaataaagcatctgaattaacaagcttttactatgcatttgttcagggcatga |
400 |
Q |
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| T |
32988361 |
atcaatttttattaactgagggcgtaaatcacgttaaaactttgctttaataaagcatctgaattaacaagcttttactatgcatttgttcagggcatga |
32988262 |
T |
|
| Q |
401 |
tgaataactgctggttcaaagtgaaatcaagtttatgcaaagct |
444 |
Q |
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| T |
32988261 |
tgaataactgctggttcaaagtgaaatcaagtttatgcaaagct |
32988218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 32960175 - 32960034
Alignment:
| Q |
1 |
tgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgcttttggtccttggaagttgaagtgttg |
100 |
Q |
| |
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|||||||||||||||||||| |||||| ||| ||| ||||||| ||| || || || || ||||| |||||||||||||| || || ||||||||||| |
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| T |
32960175 |
tgaaacatggcaagtatgcaaattggagcatcaagagaaaccaagcaaatatggaaaatattggtgttggtgcttttggtctttagaggttgaagtgtta |
32960076 |
T |
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| Q |
101 |
gaccttctaggagccaaggatattgctgtacgagcttgggat |
142 |
Q |
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||| || | |||||||| || ||||| ||||| || |||||| |
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| T |
32960075 |
gacttttttggagccaaagagattgcagtacgtgcatgggat |
32960034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 24863675 - 24863496
Alignment:
| Q |
2 |
gaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgcttttggtccttggaagttgaagtgttgg |
101 |
Q |
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||||||||||| || ||||||||||||||| |||||||||||| || || || || || ||||| |||||||||||||| |||||||||| ||| ||| |
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| T |
24863675 |
gaaacatggcacgtgtgcacattggaccatccagaaaaaccaacaaaatatggaaaatattggtgttggtgcttttggtctctggaagttgaggtgctgg |
24863576 |
T |
|
| Q |
102 |
accttctaggagccaaggatattgctgtacgagcttgggatgagtccctcaacacccaacctcagaacctcatttggaat |
181 |
Q |
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||||||| ||| ||||||| ||||||||| |||| ||||||||| | ||||||||||||||| | || |||||||||||| |
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| T |
24863575 |
accttcttggaaccaaggagattgctgtaagagcatgggatgaggcactcaacacccaacctgaaaatctcatttggaat |
24863496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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