View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18611_low_5 (Length: 368)
Name: NF18611_low_5
Description: NF18611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18611_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 32989427 - 32989211
Alignment:
| Q |
1 |
catggttttcctgttagaattataatacctggtttcattggaggaagaatggtgaaatggttgaagcgtattattgttacttctaaacaatctgataatt |
100 |
Q |
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| T |
32989427 |
catggttttcctgttagaattataatacctggtttcattggaggaagaatggtgaaatggttgaagcgtattattgttacttctaaacaatctgataatt |
32989328 |
T |
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| Q |
101 |
attatcactacaatgataatagagtacttccttcacatgttgatgctgagcttgccaatgctgaaggtaatttattttggttcgaaccggacctactagg |
200 |
Q |
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| T |
32989327 |
attatcactacaatgataatagagtacttccttcacatgttgatgctgagcttgccaatgctgaaggtaatttattttggttcgaaccggacctactagg |
32989228 |
T |
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| Q |
201 |
tatcaattgaactgtac |
217 |
Q |
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| T |
32989227 |
tatcaattgaactgtac |
32989211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 281 - 368
Target Start/End: Complemental strand, 32989147 - 32989060
Alignment:
| Q |
281 |
gcttggtggtataagtcggagtatattataaacgagctgaatgtaaactctgtgataacatcaccatgccatgatgaaatactgccta |
368 |
Q |
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| T |
32989147 |
gcttggtggtataagccggagtatattataaacgagctgaatgtaaactctgtgataacatcaccatgccatgatgaaatactgccta |
32989060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 32961737 - 32961606
Alignment:
| Q |
28 |
cctggtttcattggaggaagaatggtgaaatggttgaagcgtattattgttacttctaaacaatctgataattattatcactacaatgataatagagtac |
127 |
Q |
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| T |
32961737 |
cctggtttcactgccggaagaatggtgaaatggttgaagcgaatcattgtaacaaccaaagaatctgatagccattatcattaccatgataacagagtac |
32961638 |
T |
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| Q |
128 |
ttccttcacatgttgatgctgagcttgccaat |
159 |
Q |
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| T |
32961637 |
ttccctcgcaagttgatgctgagcttgccaat |
32961606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 24865565 - 24865439
Alignment:
| Q |
20 |
ttataatacctggtttcattggaggaagaatggtgaaatggttgaagcgtattattgttacttctaaacaatctgataattattatcactacaatgataa |
119 |
Q |
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| T |
24865565 |
ttattataccgggttttatcggtggaaggatggtgaaatggcttaagaggattgttgttactactgatgaatgtgatggtcattatcattataaggataa |
24865466 |
T |
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| Q |
120 |
tagagtacttccttcacatgttgatgc |
146 |
Q |
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| T |
24865465 |
tagagttcttccttctcatgttgatgc |
24865439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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