View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18611_low_6 (Length: 349)
Name: NF18611_low_6
Description: NF18611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18611_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 7089194 - 7088872
Alignment:
| Q |
13 |
catcaaccatcaaccattcattacattattcacatgtcatactatatccctaagacaaaaaa-gaagaaaccatagtcataacaaactaccaaacatagc |
111 |
Q |
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| T |
7089194 |
catcaaccatcaaccattcgttacattattcacatgtcatactatatccctaagacaaaaaaagaagaaaccatagtcataacaaactaccaa-catagc |
7089096 |
T |
|
| Q |
112 |
aacagcattcaccctcaaagaacaagaatgaaaacttttcacttgacacttttcacaacatttctgatctcatttaccaatttcctaacttgttttgcaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089095 |
aacagcattcaccctcaaagaacaagaatgaaaacttttcacttgacacttttcacaacatttctgatctcatttaccaatttcctaacttgttttgcaa |
7088996 |
T |
|
| Q |
212 |
acaacgacgtaacgattcagttaaacgacgacgtcctcggtttaattgtgttcaaatcagacctccaagacccttcatcttacctttcttcatggaatga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7088995 |
acaacgacgtaacgattcagttaaacgacgacgtcctcggtttaattgtgttcaaatcagacctccaagacccttcatcttacctttcttcatggaatga |
7088896 |
T |
|
| Q |
312 |
agatgatatcaatccatgttcatg |
335 |
Q |
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|||||||||||||||||||||||| |
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| T |
7088895 |
agatgatatcaatccatgttcatg |
7088872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 7076368 - 7076091
Alignment:
| Q |
20 |
catcaaccattcattacattattcacatgtcatactatatccctaagacaaaaaa-gaagaaaccatagtcataacaaactaccaaacatagcaacagca |
118 |
Q |
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||||||||||||||||||||||||| |||| ||||| ||||| |||||||||||| ||||||| |||| | ||| |||||||||||| ||| |||| |
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| T |
7076368 |
catcaaccattcattacattattcatatgtgatactgtatccttaagacaaaaaaagaagaaatcatactaatagcaaactaccaaatatatcaac---- |
7076273 |
T |
|
| Q |
119 |
ttcaccctcaaagaacaa---gaatgaaaacttttca---------cttgacacttttcacaacatttctg--atctcatttaccaatttcctaacttgt |
204 |
Q |
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|||||||||||| ||||||||| |||||| || ||||||||||||||||||| | |||||| ||| | ||||||||||||| |
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| T |
7076272 |
------ctcaaagaacaacaagaatgaaaaattttcatcaaaatcactcgacacttttcacaacattttttttatctcacttatcggtttcctaacttgt |
7076179 |
T |
|
| Q |
205 |
tttgcaaacaacgacgtaacgattcagttaaacgacgacgtcctcggtttaattgtgttcaaatcagacctccaagacccttcatctt |
292 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||| |
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| T |
7076178 |
tttgcaaacaaggacgtaaccattcagttaaacgacgacgtcctcggcttaattgtgttcaaatcagaccttcataaccctttatctt |
7076091 |
T |
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