View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_high_10 (Length: 341)
Name: NF18612_high_10
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 22548541 - 22548857
Alignment:
| Q |
14 |
gttgttatcatggagcctgaccttaaacacaatgtggcaaatgattcagctccatgagtgtgttcctggtactcgatttgatcgttatgttgatctcggt |
113 |
Q |
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| T |
22548541 |
gttgttatcatggagcctgaccttaaacacaatgtggcaaatgattcagctccatgagtgtgttcctggtactcgatttgatcgttatgttgatctgggt |
22548640 |
T |
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| Q |
114 |
aaacatgcttttggaccaaaacttggaccctggattgtgttgccacaacaactaatagttcaaattgggtgtaatattgtgtacatggtcattggaggga |
213 |
Q |
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| T |
22548641 |
aaacatgcttttggaccaaaacttggaccctggattgtgttgccacaacaactaatagttcaaattgggtgtaatattgtgtacatggtcattggaggga |
22548740 |
T |
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| Q |
214 |
agtgtctaaagaagttcatggagattgcatgcaccaattgcacacaactcaaacaatcttactggattttgatttttggtgccattcatttctttctgtc |
313 |
Q |
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| T |
22548741 |
agtgtctaaagaagttcatggagattgcatgcaccaattgcacacaactcaaacaatcttactggattttgatttttggtgccattcatttctttctgtc |
22548840 |
T |
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| Q |
314 |
tcagcttcccaatttca |
330 |
Q |
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| T |
22548841 |
tcagcttcccaatttca |
22548857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 41893665 - 41893354
Alignment:
| Q |
19 |
tatcatggagcctgaccttaaacacaatgtggcaaatgattcagctccatgagtgtgttcctggtactcgatttgatcgttatgttgatctcggtaaaca |
118 |
Q |
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| T |
41893665 |
tatcatggtgtctaacattaaacacaatgtggcaaatgatccagctacatgaatgtgttccgggaactcgtttcgatcgttatattgatcttggtagaca |
41893566 |
T |
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| Q |
119 |
tgcttttggaccaaaacttggaccctggattgtgttgccacaacaactaatagttcaaattgggtgtaatattgtgtacatggtcattggagggaagtgt |
218 |
Q |
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| T |
41893565 |
tgcttttggaccaaaacttggagcatggattgttctacctcagcaactgattgtacaagttgggtgtgacattgtgtatatggttattggtgggaagtgt |
41893466 |
T |
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| Q |
219 |
ctaaagaagttcatggagattgcatgcaccaattgcacacaactcaaacaatcttactggattttgatttttggtgccattcatttctttctgtctcagc |
318 |
Q |
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| T |
41893465 |
ctaaagcagtttgtggagatagcatgcactgattgtacacaaatcaagcaatcttattggattatgatttttggtggcatccatttttttctgtctcagc |
41893366 |
T |
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| Q |
319 |
ttcccaatttca |
330 |
Q |
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|||| ||||||| |
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| T |
41893365 |
ttcctaatttca |
41893354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 41897587 - 41897276
Alignment:
| Q |
19 |
tatcatggagcctgaccttaaacacaatgtggcaaatgattcagctccatgagtgtgttcctggtactcgatttgatcgttatgttgatctcggtaaaca |
118 |
Q |
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| T |
41897587 |
tatcatggtgtctaacattaaacacaatgtggcaaatgatccagctacatgaatgtgttccgggaactcgtttcgatcgatatattgatcttggtagaca |
41897488 |
T |
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| Q |
119 |
tgcttttggaccaaaacttggaccctggattgtgttgccacaacaactaatagttcaaattgggtgtaatattgtgtacatggtcattggagggaagtgt |
218 |
Q |
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|||||||||||||||||||||| | |||||||| | || || ||||| || || ||| |||||||| | | ||| || ||||| ||||| ||||||||| |
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| T |
41897487 |
tgcttttggaccaaaacttggagcatggattgttctacctcagcaactgattgtacaagttgggtgtgacactgtttatatggttattggtgggaagtgt |
41897388 |
T |
|
| Q |
219 |
ctaaagaagttcatggagattgcatgcaccaattgcacacaactcaaacaatcttactggattttgatttttggtgccattcatttctttctgtctcagc |
318 |
Q |
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| T |
41897387 |
ctaaagaattttgttgagatggcattcatcagttgtacacaaatcaagcagacttattggattatgatttttggtggcatccattttttcctgtctcagc |
41897288 |
T |
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| Q |
319 |
ttcccaatttca |
330 |
Q |
| |
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|||| ||||||| |
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| T |
41897287 |
ttcctaatttca |
41897276 |
T |
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