View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18612_high_12 (Length: 281)

Name: NF18612_high_12
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18612_high_12
NF18612_high_12
[»] chr4 (4 HSPs)
chr4 (15-264)||(26949104-26949353)
chr4 (15-231)||(25141293-25141509)
chr4 (132-233)||(37061094-37061195)
chr4 (132-234)||(54027746-54027848)
[»] chr3 (3 HSPs)
chr3 (19-262)||(27167381-27167625)
chr3 (127-233)||(49499399-49499505)
chr3 (19-122)||(21160789-21160892)
[»] scaffold0146 (1 HSPs)
scaffold0146 (25-264)||(24072-24312)
[»] chr2 (6 HSPs)
chr2 (19-264)||(43870267-43870512)
chr2 (22-264)||(43864588-43864831)
chr2 (105-264)||(40473041-40473201)
chr2 (114-234)||(11818487-11818607)
chr2 (161-262)||(32076960-32077062)
chr2 (180-264)||(29694479-29694564)
[»] chr7 (6 HSPs)
chr7 (21-123)||(31805401-31805502)
chr7 (127-233)||(48100785-48100891)
chr7 (138-264)||(29738790-29738917)
chr7 (132-211)||(27810469-27810548)
chr7 (138-264)||(41210110-41210237)
chr7 (127-172)||(33611139-33611184)
[»] chr5 (8 HSPs)
chr5 (19-264)||(28793052-28793297)
chr5 (161-264)||(13907610-13907714)
chr5 (127-201)||(19237655-19237729)
chr5 (132-177)||(6783307-6783352)
chr5 (138-234)||(40299902-40299998)
chr5 (19-122)||(5615502-5615605)
chr5 (132-186)||(22786130-22786184)
chr5 (138-234)||(26683477-26683573)
[»] chr1 (7 HSPs)
chr1 (127-224)||(4614879-4614976)
chr1 (132-233)||(13288081-13288182)
chr1 (161-264)||(44312827-44312931)
chr1 (114-234)||(24065189-24065309)
chr1 (166-264)||(42474449-42474548)
chr1 (120-218)||(41117171-41117269)
chr1 (193-264)||(12138457-12138529)
[»] chr8 (5 HSPs)
chr8 (161-264)||(28417581-28417685)
chr8 (161-264)||(33213624-33213728)
chr8 (128-222)||(37590093-37590187)
chr8 (114-199)||(2246800-2246885)
chr8 (138-214)||(42080464-42080540)
[»] chr6 (7 HSPs)
chr6 (114-224)||(23508904-23509014)
chr6 (138-264)||(34433549-34433676)
chr6 (49-218)||(16323338-16323507)
chr6 (49-218)||(16335486-16335655)
chr6 (135-185)||(21699303-21699353)
chr6 (161-264)||(1369671-1369775)
chr6 (87-231)||(16436430-16436574)
[»] scaffold0019 (1 HSPs)
scaffold0019 (138-224)||(73392-73478)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 26949104 - 26949353
Alignment:
Q  15 aatattgattttgagattgattataaaattacccgtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26949104 aatattgattttgagattgattataaaattacccgtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaat 26949203  T
Q  115 ctctatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26949204 ctctatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagc 26949303  T
Q  215 tagttccgttacttattttcgttcccttcttgtattgaacctattattat 264  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||    
T  26949304 tagtcctgttacttattttcgttcccttcttgtattgaacctattattat 26949353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 25141293 - 25141509
Alignment:
Q  15 aatattgattttgagattgattataaaattacccgtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaat 114  Q
    ||||||||||| ||| |||| |  ||||||||  |||||| |||||| |||||| ||  ||| || || ||||||||| | |||||||  |||||||||     
T  25141293 aatattgatttcgagcttgactcaaaaattacatgtgatgctttccagtcccgtcgaggagacgtttcagagtttggtaacattatcacatcttgcaaag 25141392  T
Q  115 ctctatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagc 214  Q
    |||||||| | |||||||| ||||||||| | || ||||||     ||||||||||||||  || |||||||| ||||||| |||||| |||||||||||    
T  25141393 ctctattttccgctttcttcacaaactcttgagtagagtttatccggcgacaagcaaatgcagctgctcatgcccttgcagaagaggcgacatttctagc 25141492  T
Q  215 tagttccgttacttatt 231  Q
    |||| || ||| |||||    
T  25141493 tagtcccattatttatt 25141509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 37061195 - 37061094
Alignment:
Q  132 tttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttatt 231  Q
    ||||| |||||||||||||||||| ||| | ||||| |||||||||  ||||||| ||||||| |||| || |  |||||||||||| |||||  |||||    
T  37061195 tttaccaactctagggtggagtttgctaggtgacaaacaaatgtggttgctcatgtgcttgcaagagaagccatgtttctagctagtcccgttgtttatt 37061096  T
Q  232 tt 233  Q
    ||    
T  37061095 tt 37061094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 54027848 - 54027746
Alignment:
Q  132 tttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttatt 231  Q
    ||||| ||||||||||||||||||| || ||||||||| |||||||  |||||  | |||| ||| || || |||||||| |||| | ||| || |||||    
T  54027848 tttaccaactctagggtggagttttttaggcgacaagctaatgtggtggctcacactcttgtaggggaagccacatttctcgctactcccgctatttatt 54027749  T
Q  232 ttc 234  Q
    |||    
T  54027748 ttc 54027746  T

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Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 27167381 - 27167625
Alignment:
Q  19 ttgattttgagattgattataaaattacccgtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaatctct 118  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||  |||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  27167381 ttgattttgagattgattctaaaattacccctgatgctttccattcctatagagaagatgtctccgagtttggtcatattatcacttcttgcaaatctct 27167480  T
Q  119 atttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagt 218  Q
    |||||| |  |||||||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||||| |||||||||||||||||| || ||    
T  27167481 atttacagtattctttacaaactctagggtagagttttctaggtgacaagcaaatgcggccgctcatgcgcttgcgggagaggcaacatttctaactcgt 27167580  T
Q  219 tccgttacttattttcgt-tcccttcttgtattgaacctattatt 262  Q
     | ||||||||||||||| |||| ||||||||| |||||||||||    
T  27167581 ccggttacttattttcgtatcccctcttgtatttaacctattatt 27167625  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 49499399 - 49499505
Alignment:
Q  127 ctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttac 226  Q
    |||| ||||| |||||||||||||||||| ||| |||||||||||||||||| |||||||  |||||| |||| || || ||||||||||||  |||||     
T  49499399 ctttttttaccaactctagggtggagtttgctaggcgacaagcaaatgtggctgctcatgttcttgcaagagaagccacgtttctagctagtctcgttat 49499498  T
Q  227 ttatttt 233  Q
    |||||||    
T  49499499 ttatttt 49499505  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 21160892 - 21160789
Alignment:
Q  19 ttgattttgagattgattataaaattacccgtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaatctct 118  Q
    ||||||||||| |||||| |||| ||||  | |||| ||||||||||||| || | || || ||||||||||| ||| | ||||  ||||||||| ||||    
T  21160892 ttgattttgagcttgattctaaagttacatgcgatgctttccattcccgttgagatgaagtttccgagtttgggcatgtcatcacatcttgcaaagctct 21160793  T
Q  119 attt 122  Q
    ||||    
T  21160792 attt 21160789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 24072 - 24312
Alignment:
Q  25 ttgagattgattataaaattacccgtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaatctctatttac 124  Q
    |||| ||||||| ||||||||||||||||| ||||||||| |||| | |||||||||| ||||||||||||||| ||  |||||| ||||||||||||||    
T  24072 ttgaaattgattctaaaattacccgtgatgctttccattctcgtaaagaagatgtctctgagtttggtcatattttcgcctcttgaaaatctctatttac 24171  T
Q  125 tgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgtt 224  Q
     | |||| |||||||||||||| |||||||||||| || |||||||||||  ||  |||||||||||||||||||||||||||||||| ||||| ||| |    
T  24172 cgttttccttacaaactctaggttggagttttctaggcaacaagcaaatgcagcaactcatgcgcttgcaggagaggcaacatttctacctagtcccgct 24271  T
Q  225 acttattttcgt-tcccttcttgtattgaacctattattat 264  Q
    ||||||||| || |||| |||||||||||| ||||||||||    
T  24272 acttattttagtatcccatcttgtattgaatctattattat 24312  T

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Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 43870267 - 43870512
Alignment:
Q  19 ttgattttgagattgattataaaattacccg-tgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaatctc 117  Q
    |||||||||||||||||| |||||||||||| ||||| |||||||||| || || ||||||||| ||||||||||||| |||||| || ||||||||||     
T  43870267 ttgattttgagattgattttaaaattacccggtgatgctttccattccagtcgagaagatgtcttcgagtttggtcatgttatcacct-ttgcaaatctt 43870365  T
Q  118 tatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctag 217  Q
    ||||| | |||||||||||||||||||||||||||||||| |   ||||||||||||  |||||||||||||||| ||||||||||||| ||||||||||    
T  43870366 tattttccgctttctttacaaactctagggtggagttttcgagaggacaagcaaatgcagccgctcatgcgcttgtaggagaggcaaca-ttctagctag 43870464  T
Q  218 ttccgttacttattttcgt-tcccttcttgtattgaacctattattat 264  Q
    |  ||||||| |||||||| || | |||||||||||| ||||||||||    
T  43870465 tctcgttactcattttcgtatctcatcttgtattgaatctattattat 43870512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 43864588 - 43864831
Alignment:
Q  22 attttgagattgattataaaattacccgtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaatctctatt 121  Q
    ||||||| ||||||| |||||||||| |||||| ||| |||| |||| || ||||||||||||||||||||||   ||||| || |||||||||||| ||    
T  43864588 attttgaaattgattctaaaattacctgtgatgcttttcatttccgtcgagaagatgtctccgagtttggtcaggctatcaccttttgcaaatctctgtt 43864687  T
Q  122 tactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttcc 221  Q
    ||| ||||||||||||||||||||| || ||||||| |   || |||||||||  ||||||||||||||||||| |||| ||||||||||| ||| | ||    
T  43864688 taccgctttctttacaaactctaggatgaagttttccagatgataagcaaatgcagccgctcatgcgcttgcagaagagacaacatttctaactaatccc 43864787  T
Q  222 gttacttattttcgt-tcccttcttgtattgaacctattattat 264  Q
    ||||||||||||||| || | |||||||||||| ||||||||||    
T  43864788 gttacttattttcgtatctcatcttgtattgaatctattattat 43864831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 264
Target Start/End: Original strand, 40473041 - 40473201
Alignment:
Q  105 tcttgcaaatctctatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaa 204  Q
    ||||| ||| |||| ||| | |||||||| |  ||||||||||| |||||  ||| | ||||||||||||  || ||||||||||||||| ||||||| |    
T  40473041 tcttgtaaagctctcttttccgctttcttcatcaactctagggtagagttcactaggtgacaagcaaatgcagcagctcatgcgcttgcaagagaggcta 40473140  T
Q  205 catttctagctagttccgttacttattttcgt-tcccttcttgtattgaacctattattat 264  Q
    |||||||||||||| |||| | ||||| || | || |||||||||||||| | ||||||||    
T  40473141 catttctagctagtcccgtcatttattatcatatcacttcttgtattgaaacaattattat 40473201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 11818607 - 11818487
Alignment:
Q  114 tctctatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctag 213  Q
    ||||| |||| | |||||||||| ||||||||||||||||||  || |||||||||||| | ||  |||||||  ||||||||||| || || || ||||    
T  11818607 tctctgtttagttctttctttaccaactctagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactag 11818508  T
Q  214 ctagttccgttacttattttc 234  Q
    ||||| |||||| ||||||||    
T  11818507 ctagtcccgttatttattttc 11818487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 32077062 - 32076960
Alignment:
Q  161 gcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttcgt-tcccttcttgtattgaacctatt 259  Q
    ||||||||||||||  || ||||||||||||||| ||||| | ||||||||||||||| | || | ||||| || | ||||||||||||||||| | |||    
T  32077062 gcgacaagcaaatgcagcagctcatgcgcttgcaagagagcctacatttctagctagtccggtcatttattatcatatcccttcttgtattgaaacaatt 32076963  T
Q  260 att 262  Q
    |||    
T  32076962 att 32076960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 29694564 - 29694479
Alignment:
Q  180 gctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttcgt-tcccttcttgtattgaacctattattat 264  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||| | ||||| || | |||||||||| |||||| | ||||||||    
T  29694564 gctcatgcgcttgcaagagaggctacatttctagctagtcccgtcatttattatcatatcccttcttgcattgaaacaattattat 29694479  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 31805401 - 31805502
Alignment:
Q  21 gattttgagattgattataaaattacccgtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaatctctat 120  Q
    |||||||||||||||| |||||||| ||| |||| ||||||||| ||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  31805401 gattttgagattgattttaaaattagccg-gatgctttccattctcgtaggaaagatgtctctgagtttggtcatattatcgcctcttgcaaatctctat 31805499  T
Q  121 tta 123  Q
    |||    
T  31805500 tta 31805502  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 48100891 - 48100785
Alignment:
Q  127 ctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttac 226  Q
    |||| ||||| |||||||||||||||||| ||| |||||||||||||||||  ||||||| ||||||||||||  | || ||||||| |||| |||||      
T  48100891 ctttttttaccaactctagggtggagtttgctaggcgacaagcaaatgtggttgctcatgtgcttgcaggagaatccacgtttctagttagtcccgttgt 48100792  T
Q  227 ttatttt 233  Q
    |||||||    
T  48100791 ttatttt 48100785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 29738790 - 29738917
Alignment:
Q  138 aactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttcgt- 236  Q
    ||||||||||| |||||  ||| ||||| ||||||||| |  ||| ||||||||| | ||||||| ||||||||||||||| |||| | ||||| || |     
T  29738790 aactctagggtagagttcactaggcgactagcaaatgtagtagcttatgcgcttgtaagagaggctacatttctagctagtcccgtcatttattatcata 29738889  T
Q  237 tcccttcttgtattgaacctattattat 264  Q
    ||||||||||||||| | | ||||||||    
T  29738890 tcccttcttgtattgcaacaattattat 29738917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 27810469 - 27810548
Alignment:
Q  132 tttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttct 211  Q
    ||||| |||||||||||||| ||| ||| | ||||||||||||||||  ||||| |||||| ||| ||||| || |||||    
T  27810469 tttaccaactctagggtggaatttgctatgagacaagcaaatgtggctactcatacgcttgtaggggaggccacgtttct 27810548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 41210110 - 41210237
Alignment:
Q  138 aactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttc-gt 236  Q
    ||||| ||||| |||||  ||| ||||||||||||||  || |||||||||||| || |||| || | |||||||| |||| |||| | ||||| ||       
T  41210110 aactccagggtagagttcactaggcgacaagcaaatgcagcagctcatgcgctttcaagagatgctatatttctagttagtcccgtcatttattatcaaa 41210209  T
Q  237 tcccttcttgtattgaacctattattat 264  Q
    ||||||||||||||||| | ||||||||    
T  41210210 tcccttcttgtattgaaacaattattat 41210237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 33611184 - 33611139
Alignment:
Q  127 ctttctttacaaactctagggtggagttttctaagcgacaagcaaa 172  Q
    |||||||||| ||||||||||||||||||  || ||||||||||||    
T  33611184 ctttctttaccaactctagggtggagtttgttaggcgacaagcaaa 33611139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 28793052 - 28793297
Alignment:
Q  19 ttgattttgagattgattataaaattacccgtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaatctct 118  Q
    |||||||| || |||||  ||||||||| ||||||| |||||||||  || || | ||| | || |||| ||| || ||||| || ||||  ||| ||||    
T  28793052 ttgatttttagcttgatcctaaaattactcgtgatgctttccattcatgtcgagatgatatttctgagtatggacacattattaaatcttttaaagctct 28793151  T
Q  119 atttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagt 218  Q
     ||| |  ||||||||||||||| ||||||||||||  |||  |||||| |||||   |  ||||||||||||||| ||||| | ||||||||| |||||    
T  28793152 tttttcctctttctttacaaact-tagggtggagttcactagacgacaaacaaattcagttgctcatgcgcttgcatgagagactacatttctaactagt 28793250  T
Q  219 tccgttacttattttcgt-tcccttcttgtattgaacctattattat 264  Q
     |||||| | |||||||| |||| |||||||||||| ||||||||||    
T  28793251 cccgttattaattttcgtatcccatcttgtattgaatctattattat 28793297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 13907714 - 13907610
Alignment:
Q  161 gcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttcgt-tcccttcttgtattgaacctatt 259  Q
    ||||||||||||||  || ||||||||| ||||| ||||||| ||||||||||||||| |||| | ||||| || | ||||||||||||||||| | |||    
T  13907714 gcgacaagcaaatgcagcagctcatgcgtttgcaagagaggctacatttctagctagtcccgtcatttattatcatatcccttcttgtattgaaacaatt 13907615  T
Q  260 attat 264  Q
    |||||    
T  13907614 attat 13907610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 19237655 - 19237729
Alignment:
Q  127 ctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagagg 201  Q
    |||||||||| ||||||||||||||||||  || |||||||||||||| ||  |||||||  |||||| ||||||    
T  19237655 ctttctttaccaactctagggtggagtttattaggcgacaagcaaatgaggttgctcatgttcttgcaagagagg 19237729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 6783307 - 6783352
Alignment:
Q  132 tttacaaactctagggtggagttttctaagcgacaagcaaatgtgg 177  Q
    ||||||||||||||||||||||||  || |||||||||||||||||    
T  6783307 tttacaaactctagggtggagtttaataggcgacaagcaaatgtgg 6783352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 40299902 - 40299998
Alignment:
Q  138 aactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttc 234  Q
    |||||| |||||||||||  || |||||||||||| ||||  |||||| | || | || |||||| |||||||| ||||||||||||  ||||||||    
T  40299902 aactctcgggtggagtttgttaggcgacaagcaaacgtggttgctcatactctcgtagaagaggccacatttctcgctagttccgttgtttattttc 40299998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 5615605 - 5615502
Alignment:
Q  19 ttgattttgagattgattataaaattacccgtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaatctct 118  Q
    ||||||||||| |||||| |||| ||||  | |||| ||||||||||||| || | || || ||||||||||| ||| | ||||  ||||||||| ||||    
T  5615605 ttgattttgagcttgattctaaagttacatgcgatgctttccattcccgttgagatgaagtttccgagtttgggcatgtcatcacatcttgcaaagctct 5615506  T
Q  119 attt 122  Q
    ||||    
T  5615505 attt 5615502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 22786184 - 22786130
Alignment:
Q  132 tttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatg 186  Q
    ||||||||||| |||||||||||  ||| ||||||||| |||||||| |||||||    
T  22786184 tttacaaactccagggtggagttcgctaggcgacaagcgaatgtggcggctcatg 22786130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 26683477 - 26683573
Alignment:
Q  138 aactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttc 234  Q
    |||||| |||||||||||  |  ||||||||  |||||||  |||||| | |||||||| ||||| |||||||| |||||| ||| || ||||||||    
T  26683477 aactctcgggtggagtttgttccgcgacaagttaatgtggtggctcatactcttgcaggggaggccacatttcttgctagtcccgctatttattttc 26683573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 4614879 - 4614976
Alignment:
Q  127 ctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgtt 224  Q
    |||| ||||| |||||||||||||||||| ||| ||||||| |||||||||  ||||||| |||||||| ||| || || |||||| |||||||||||    
T  4614879 ctttttttaccaactctagggtggagtttgctaggcgacaaacaaatgtggttgctcatgtgcttgcagaagaagccacgtttctaactagttccgtt 4614976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 13288081 - 13288182
Alignment:
Q  132 tttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttatt 231  Q
    ||||| |||||||||||||||||| ||| ||||||| |||||| ||  ||||||| |||||||||||| || | ||||||||||||| |||||  |||||    
T  13288081 tttaccaactctagggtggagtttgctaggcgacaaacaaatgcggttgctcatgtgcttgcaggagaagccatatttctagctagtcccgttgtttatt 13288180  T
Q  232 tt 233  Q
    ||    
T  13288181 tt 13288182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 44312931 - 44312827
Alignment:
Q  161 gcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttcgt-tcccttcttgtattgaacctatt 259  Q
    ||||||||||||||  || ||||||||||||||| |||| || ||||||||||||||| |||| | ||||| || | ||||||||||||||||| | |||    
T  44312931 gcgacaagcaaatgcagcagctcatgcgcttgcaagagaagctacatttctagctagtcccgtcatttattatcatatcccttcttgtattgaaacaatt 44312832  T
Q  260 attat 264  Q
    |||||    
T  44312831 attat 44312827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 24065189 - 24065309
Alignment:
Q  114 tctctatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctag 213  Q
    ||||| |||| | |||||||||| |||| |||||||||||||  || |||||||||||| | ||  |||||||  ||||||||||| || || || ||||    
T  24065189 tctctgtttagttctttctttaccaactttagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactag 24065288  T
Q  214 ctagttccgttacttattttc 234  Q
    ||||| |||||  ||||||||    
T  24065289 ctagtcccgttgtttattttc 24065309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 42474548 - 42474449
Alignment:
Q  166 aagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttcgt-tcccttcttgtattgaacctattattat 264  Q
    |||||||||| || ||||||||||||||||||||| | |||||||||| ||||  | ||| ||||| || | |||| ||||||||||||  |||||||||    
T  42474548 aagcaaatgtagctgctcatgcgcttgcaggagagactacatttctagatagtctcattatttattatcatatcccatcttgtattgaaaatattattat 42474449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 41117171 - 41117269
Alignment:
Q  120 tttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagt 218  Q
    ||||||||||| ||| | |||||| |||||||||||  || ||||||||| |||| ||  |||||||| |||||| |||| || || || |||||||||    
T  41117171 tttactgctttattttccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatgctcttgcaagagaagccacgttactagctagt 41117269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 12138529 - 12138457
Alignment:
Q  193 caggagaggcaacatttctagctagttccgttacttattttcgt-tcccttcttgtattgaacctattattat 264  Q
    ||||||| || |||||||||||||||  |||||||||||| | | |||||| || ||||||| ||||||||||    
T  12138529 caggagaagctacatttctagctagtctcgttacttatttccatatccctttttatattgaatctattattat 12138457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 28417581 - 28417685
Alignment:
Q  161 gcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttcgt-tcccttcttgtattgaacctatt 259  Q
    ||||||||||||||  || ||||||||||||||| ||||||| ||||||||||||||| |||| | ||||| || | ||||||||| ||||||| | |||    
T  28417581 gcgacaagcaaatgcagcagctcatgcgcttgcaagagaggctacatttctagctagtcccgtcatttattatcatatcccttcttatattgaaacaatt 28417680  T
Q  260 attat 264  Q
    |||||    
T  28417681 attat 28417685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 33213624 - 33213728
Alignment:
Q  161 gcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttcgt-tcccttcttgtattgaacctatt 259  Q
    ||||||||||||||  || ||||||  ||||||| ||||| | ||||||||||||||| |||| | ||||| || | ||||||||||||||||| | |||    
T  33213624 gcgacaagcaaatgcagcagctcatttgcttgcaagagagactacatttctagctagtcccgtcatttattatcatatcccttcttgtattgaaacaatt 33213723  T
Q  260 attat 264  Q
    |||||    
T  33213724 attat 33213728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 37590187 - 37590093
Alignment:
Q  128 tttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccg 222  Q
    ||||||| | ||||||||||||||||||  || ||||||||| || ||||  |||||||| |||||| | ||||| || | | ||||||||||||    
T  37590187 tttcttttctaactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagttccg 37590093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 2246885 - 2246800
Alignment:
Q  114 tctctatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggaga 199  Q
    ||||| |||| | |||||||||| ||||||||||||||||||  || || ||||||||| | ||  |||||||  |||||||||||    
T  2246885 tctctgtttaattctttctttaccaactctagggtggagtttgttaggcaacaagcaaacgaggttgctcatgttcttgcaggaga 2246800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 42080464 - 42080540
Alignment:
Q  138 aactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagc 214  Q
    |||||| ||||||||||| ||| | ||||||||||||||   |||||| | |||||||||||| | |||||| ||||    
T  42080464 aactctcgggtggagtttgctaggagacaagcaaatgtgattgctcatactcttgcaggagagaccacatttgtagc 42080540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 23509014 - 23508904
Alignment:
Q  114 tctctatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctag 213  Q
    |||||||||| | |||||||||| || |||||||||||||||  || |||||||||||||| ||  |||||||  ||||||||||| || ||||| | ||    
T  23509014 tctctatttagttctttctttaccaattctagggtggagtttgttaggcgacaagcaaatggggttgctcatgttcttgcaggagaagccacattacgag 23508915  T
Q  214 ctagttccgtt 224  Q
    ||||| |||||    
T  23508914 ctagtcccgtt 23508904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 34433549 - 34433676
Alignment:
Q  138 aactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttcgt- 236  Q
    ||||| ||||| |||||  ||| || |||||||||||  || |||||||||||| || ||||||| ||||||||| ||||| |||| | ||||| || |     
T  34433549 aactccagggtagagttcactatgcaacaagcaaatgcagcagctcatgcgcttacaagagaggctacatttctaactagtcccgtcatttattatcata 34433648  T
Q  237 tcccttcttgtattgaacctattattat 264  Q
    ||||||||||||||||| | ||||||||    
T  34433649 tcccttcttgtattgaaacaattattat 34433676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 16323338 - 16323507
Alignment:
Q  49 gtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaatctctatttactgctttctttacaaactctagggt 148  Q
    |||||| ||||| ||| |||||| | ||| | ||||||||||| ||| |||||   ||||||||| |||| ||| | |||||||||||||| || ||| |    
T  16323338 gtgatgctttcctttctcgtagagatgatatttccgagtttgggcatgttatcgcatcttgcaaagctctcttttccgctttctttacaaattccaggat 16323437  T
Q  149 ggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagt 218  Q
     |||||  |||  |||||||||||||  ||||||||||  || | ||||||||  | |||||||||||||    
T  16323438 agagttcactagccgacaagcaaatgcagccgctcatgttctagtaggagaggatatatttctagctagt 16323507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 16335486 - 16335655
Alignment:
Q  49 gtgatgttttccattcccgtagaaaagatgtctccgagtttggtcatattatcaactcttgcaaatctctatttactgctttctttacaaactctagggt 148  Q
    |||||| ||||| ||| |||||| | ||| | ||||||||||| ||| |||||   ||||||||| |||| ||| | |||||||||||||| || ||| |    
T  16335486 gtgatgctttcctttctcgtagagatgatatttccgagtttgggcatgttatcgcatcttgcaaagctctcttttccgctttctttacaaattccaggat 16335585  T
Q  149 ggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagt 218  Q
     |||||  |||  |||||||||||||  ||||||||||  || | ||||||||  | |||||||||||||    
T  16335586 agagttcactagccgacaagcaaatgcagccgctcatgttctagtaggagaggatatatttctagctagt 16335655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 21699353 - 21699303
Alignment:
Q  135 acaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcat 185  Q
    ||||||||||||||||||||| ||  ||||| |||||||||||| ||||||    
T  21699353 acaaactctagggtggagtttactcggcgacgagcaaatgtggctgctcat 21699303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 1369671 - 1369775
Alignment:
Q  161 gcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgttacttattttcgt-tcccttcttgtattgaacctatt 259  Q
    ||||||||||||||  || ||||||| | ||||||||||| | || |||||| ||||||| | || ||||| || | || | |||||||||||| |||||    
T  1369671 gcgacaagcaaatgcagctgctcatgtgtttgcaggagagactacgtttctaactagttctgctatttattatcatatctcatcttgtattgaaactatt 1369770  T
Q  260 attat 264  Q
    |||||    
T  1369771 attat 1369775  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 16436430 - 16436574
Alignment:
Q  87 tttggtcatattatcaactcttgcaaatctctatttactgctttctttacaaactctagggtggagttttctaagcgacaagcaaatgtggccgctcatg 186  Q
    |||||| | |||||||  ||||||||| ||||||||   || ||||| ||||||||| |||| ||||||     ||||||||||||||  |  |||||||    
T  16436430 tttggtaacattatcacatcttgcaaagctctatttttggccttcttcacaaactcttgggtagagtttatccggcgacaagcaaatgcagttgctcatg 16436529  T
Q  187 cgcttgcaggagaggcaacatttctagctagttccgttacttatt 231  Q
    | ||||||||||| |  |||||||||| |||| || ||| |||||    
T  16436530 cccttgcaggagatgtgacatttctagttagtcccattatttatt 16436574  T

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Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 73478 - 73392
Alignment:
Q  138 aactctagggtggagttttctaagcgacaagcaaatgtggccgctcatgcgcttgcaggagaggcaacatttctagctagttccgtt 224  Q
    |||||| ||||||||||| ||||| |||||||||||||||  ||| || | || ||||||||| | || |||||||||||| |||||    
T  73478 aactctcgggtggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgtt 73392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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