View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_high_16 (Length: 268)
Name: NF18612_high_16
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 26651977 - 26651725
Alignment:
| Q |
1 |
aattatttgctaagatatatttacggtagttgcacttaataagagaacaagagactttaccactttaatgcccatcaccaaccaccctccaagaatttgt |
100 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26651977 |
aattatttgctaagatatattcacagtagttgcacttaataagagaacaagagactttaccactttaatgcccatcaccaaccaccctccaagaacttgt |
26651878 |
T |
|
| Q |
101 |
tactcctcccctgatgaattttac---ggtaattcattattcctaaagttattcgctgacaataatttttcacggactcgagaataaattattacccgac |
197 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26651877 |
tactcctcccctaatgaattttacggtggtaattcattattcctaaagttattcgctgacaataatttttcactgactcgagaataaattattacccgac |
26651778 |
T |
|
| Q |
198 |
aannnnnnnnactcttatcttataaaaattatatcacctcaaattccaatcat |
250 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26651777 |
aaaattttctactcttatcttataaaaattatatcacctcaaattccaatcat |
26651725 |
T |
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