View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_high_20 (Length: 229)
Name: NF18612_high_20
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 33235037 - 33235236
Alignment:
| Q |
14 |
caaaggccaaagtaatttatttcttgaattataagagcaagctagcatatcattgtgaaggaaagaaagaagaagtagaaaaatgggggtacaaggtact |
113 |
Q |
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| T |
33235037 |
caaaggccaaagtaatttatttcttgaattataagagcaagctagcatatcattgtgaaggaaagaaagaagaagtagaaaaatgggggtacaaggtact |
33235136 |
T |
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| Q |
114 |
ttagaatacttgtctgatttactcagtagcacnnnnnnnnnnnngaagaagcaaactcagactgtatctcttaaaatcagaatggactgtgaaggttgtg |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33235137 |
ttagaatacttgtctgatttactcagtagcacaaaaaagaaaaagaagaagcaaactcaaactgtatctcttaaaatcagaatggactgtgaaggttgtg |
33235236 |
T |
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