View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_high_8 (Length: 386)
Name: NF18612_high_8
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 120 - 324
Target Start/End: Complemental strand, 24538634 - 24538429
Alignment:
| Q |
120 |
atggttatggattttgattctctcaagttggaaaaataaaa-cttgaggaaataatgtgaaaatttagagcattgaaatataaagggaggatatctttga |
218 |
Q |
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| T |
24538634 |
atggttatggattttgattctctcaagttggaaaaaaaaaaacttgtggaaataatgtgaaaatttagagcattgaaatataaagggaggatatctttga |
24538535 |
T |
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| Q |
219 |
aatttgaaagaaaaagccatccaagaacctaaacaataacaatttttcgcataattaatattaaatccaacatgatgattcatgtccagaactagaatca |
318 |
Q |
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| T |
24538534 |
aatttgaaagaaaaagccatccaaaaacctaaacaataaaaatttctcgcataattaatattaaatccaacatgatgattcatgtccagaactagaatga |
24538435 |
T |
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| Q |
319 |
ctacaa |
324 |
Q |
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|||||| |
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| T |
24538434 |
ctacaa |
24538429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 24538764 - 24538676
Alignment:
| Q |
1 |
gaccgtaatgacacaatgagaatatgagagagttgttccaaaatggttaacaaatatcattactcttatttaaaaccttaactttttaaat |
91 |
Q |
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| T |
24538764 |
gaccgtaaagacacaatgagaatatgagag--ttgtcccaaaatggttaacaaatatcattactcttatttaaaaccttaactttttaaat |
24538676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 29704243 - 29704284
Alignment:
| Q |
275 |
aatattaaatccaacatgatgattcatgtccagaactagaat |
316 |
Q |
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| T |
29704243 |
aatattaaatcaaacattatgattcatgtccagaactggaat |
29704284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 29103810 - 29103747
Alignment:
| Q |
164 |
gaggaaataatgtgaaaatttagagcattgaaatataaagggaggatatctttgaaatttgaaa |
227 |
Q |
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| T |
29103810 |
gaggaaataatgtgacaatctagaccattaaaatataaagagaggataacattgaaatttgaaa |
29103747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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