View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_low_10 (Length: 342)
Name: NF18612_low_10
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 13537406 - 13537714
Alignment:
| Q |
16 |
atgtgtggtctacaactataagattcacacaatattatagtaaaatgagacttaacaatcaagtgattatatatatccagttacgttagaattgatctct |
115 |
Q |
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| T |
13537406 |
atgtgtggtctacaactataagattcacacaatattatagtaaaat-agacttaacaatcaagtgattaaatatatccagttacattagaattgatctat |
13537504 |
T |
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| Q |
116 |
aacgaaaacaatttttagtcgaactttactttcattttgagggaaccaacttatataaattatgatggttgtattgtaggtggcaaaaccgactatgtgc |
215 |
Q |
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| T |
13537505 |
gacaaaaacaatttttagtcgaactttactttcattttgagggaaccaacttatataaattatgatggttgtattgtaggtggcaaaaccgactatgtgc |
13537604 |
T |
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| Q |
216 |
tacacaaattagaagcagtagatgaagcaaacttgggatacaactatagcattgtaggaggaacagggttggatgaaagtttagaaaaagttgaattcga |
315 |
Q |
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| T |
13537605 |
tacacaaattagaagcaatggatgaagcaaacttgggatacaactatagcattgtaggaggaacagggttggatgaaagtttagaaaaagttgaattcga |
13537704 |
T |
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| Q |
316 |
gacaagtatt |
325 |
Q |
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| T |
13537705 |
gacaagtatt |
13537714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 58 - 325
Target Start/End: Original strand, 13541488 - 13541755
Alignment:
| Q |
58 |
aaatgagacttaacaatcaagtgattatatatatccagttacgttagaattgatctctaacgaaaacaatttttagtcgaactttactttcattttgagg |
157 |
Q |
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| T |
13541488 |
aaatgagattcaacaatcaagtaattaacgatatccagttacgttcagattgatcaatgacttaaacaatttttagtcaaacttta-tttaaatttgagg |
13541586 |
T |
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| Q |
158 |
gaaccaa-cttatataaattatgatggttgtattgtaggtggcaaaaccgactatgtgctacacaaattagaagcagtagatgaagcaaacttgggatac |
256 |
Q |
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| T |
13541587 |
gaacaaaacttatataaattatgatggtttaattgtaggtggtaaaaccgactttgtgctacacaaattagaagcaatggatgaggcaaacttgggatac |
13541686 |
T |
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| Q |
257 |
aactatagcattgtaggaggaacagggttggatgaaagtttagaaaaagttgaattcgagacaagtatt |
325 |
Q |
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| T |
13541687 |
aactatagcatagtaggaggaacaggattggatgaaagtttagagaaagttgaatttgagacaaatatt |
13541755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 13554421 - 13554568
Alignment:
| Q |
173 |
aattatgatggttgtattgtaggtggcaaaaccgactatgtgctacacaaattagaagcagtagatgaagcaaacttgggatacaactatagcattgtag |
272 |
Q |
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| T |
13554421 |
aattataatggttgtattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatgaggcaaactttggatacaactatagcttagtag |
13554520 |
T |
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| Q |
273 |
gaggaacagggttggatgaaagtttagaaaaagttgaattcgagacaa |
320 |
Q |
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| T |
13554521 |
gaggaacaggattggatgaaagtctagagaaagttgaattcgagacaa |
13554568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 173 - 325
Target Start/End: Original strand, 13530699 - 13530851
Alignment:
| Q |
173 |
aattatgatggttgtattgtaggtggcaaaaccgactatgtgctacacaaattagaagcagtagatgaagcaaacttgggatacaactatagcattgtag |
272 |
Q |
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|||||| |||||| ||||| || |||||||||| ||| |||||||||||||||||| ||||||||||| ||||||| ||||| ||||| ||| | |||| |
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| T |
13530699 |
aattataatggttatattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatgaggcaaactatggatataactacagcttagtag |
13530798 |
T |
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| Q |
273 |
gaggaacagggttggatgaaagtttagaaaaagttgaattcgagacaagtatt |
325 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
13530799 |
gaggaacagggttggatgaaagtttagagaaagttgaattcgagacaaatatt |
13530851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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