View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_low_12 (Length: 305)
Name: NF18612_low_12
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 269
Target Start/End: Original strand, 26023026 - 26023272
Alignment:
| Q |
22 |
attcatcacattcacacatgtgacgatggaatctgagaaattcatttgtgttcgagaaaccggtccttctaatagtgttgttatgattgatatgaatatg |
121 |
Q |
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| T |
26023026 |
attcatcacattcacacatgtgacgatggaatctgagaaattcatttgtgttcgagaaaccggtccttcgaatagtgttgttatgattgatatgaatatg |
26023125 |
T |
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| Q |
122 |
ccaatgcaacctttgagacggcctatcactgctgattctgctcttatgaaccccaataccagaattctcgctcttaaaggtaatgtcatgtcattaagga |
221 |
Q |
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| T |
26023126 |
cctatgcaacctttgagacggcctatcactgctgattctgctcttatgaaccccaataccagaattctcgctcttaaaggtaatgtcatgtcattaagga |
26023225 |
T |
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| Q |
222 |
ttcaattctgttatatgagctttcgtaatttaacggatcatgtaatgt |
269 |
Q |
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| T |
26023226 |
tataattgtgttttatgagcttttgttattt-acggatcatgtaatgt |
26023272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 31839241 - 31839414
Alignment:
| Q |
29 |
acattcacacatgtgacgatggaatctgagaaattcatttgtgttcgagaaaccggtccttctaatagtgttgttatgattgatatgaatatgccaatgc |
128 |
Q |
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| T |
31839241 |
acattcacgcatgtgacgatggaatctgataagtatatatgcgttcgagaaactgcgccgcagaatagcgtggttattgttgatatgaacatgccaaatc |
31839340 |
T |
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| Q |
129 |
aacctttgagacggcctatcactgctgattctgctcttatgaaccccaataccagaattctcgctcttaaaggt |
202 |
Q |
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| T |
31839341 |
agcctttgaggagacctattactgctgattctgctcttatgaatcctaattctagaattcttgctttgaaaggt |
31839414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 35731552 - 35731701
Alignment:
| Q |
22 |
attcatcacattcacacatgtgacgatggaatctgagaaattcatttgtgttcgagaaaccggtccttctaatagtgttgttatgattgatatgaatatg |
121 |
Q |
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||||||||||||||| ||||||||||||||||| || || | || |||||||||||||| ||| |||||||||||||| ||||||||| ||| |
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| T |
35731552 |
attcatcacattcacgcatgtgacgatggaatcagacaagtatatatgtgttcgagaaacgtctccacagaatagtgttgttattgttgatatgagcatg |
35731651 |
T |
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| Q |
122 |
ccaatgcaacctttgagacggcctatcactgctgattctgctcttatgaa |
171 |
Q |
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| T |
35731652 |
ccaaatcaacctttgaggaggccaattactgcggattccgctcttatgaa |
35731701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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