View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_low_13 (Length: 282)
Name: NF18612_low_13
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 270
Target Start/End: Original strand, 34141972 - 34142220
Alignment:
| Q |
22 |
gtttcttgatattgctgtcttttctgtgaacaagaaactttccccatttatatggcctatattttgaaggaatttgctcatttataagctcttcaaaagg |
121 |
Q |
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| T |
34141972 |
gtttcttgatattgctgtcttttctgtgaacaagaaactttccccatttatatggcctatattttgaagggttttgctcatttataagctcttcaaaagg |
34142071 |
T |
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| Q |
122 |
tttgacttcagcgtcatatcctgggaataaaaagaagggaatagaaaacctttccttctctgtgctcagaatcgctctgtgctccacactctcataggca |
221 |
Q |
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| T |
34142072 |
tttgacttcagcgtcatatcctgggaataaaaagaagggaatagaaaacctttccttctctgtgctcacaatcgctctgtgctccacactctcataggca |
34142171 |
T |
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| Q |
222 |
tcattgctccaaacctacaacaataaacccaattctcccgttaaatatt |
270 |
Q |
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| T |
34142172 |
tcattgctccaaacctacaacaataaacccaattctcccgttaaatatt |
34142220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 34136340 - 34136582
Alignment:
| Q |
22 |
gtttcttgatattgctgtcttttctgtgaacaagaaactttccccatttatatggcctatattttgaaggaatttgctcatttataagctcttcaaaagg |
121 |
Q |
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| T |
34136340 |
gtttcttgaaattactgtgtaatctgtggacaaaaaacttaccccatttatatggcttatattttggagagttttgcttatttgtaagctcctccaaagg |
34136439 |
T |
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| Q |
122 |
tttgacttcagcgtcatatcctgggaataaaaagaagggaatagaaaacctttccttctctgtgctcagaatcgctctgtgctccacactctcataggca |
221 |
Q |
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| T |
34136440 |
cttgatttcagcatcatgtcctggattgaagaagaatggaatagaaaacctctctttctccttgttcaccattactctatgctccacactctcataggca |
34136539 |
T |
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| Q |
222 |
tcattgctccaaacctacaacaataaacccaattctcccgtta |
264 |
Q |
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| T |
34136540 |
tcattactccaaacctgcaacaataaacccaagtctctcgtta |
34136582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 267
Target Start/End: Original strand, 34139333 - 34139537
Alignment:
| Q |
63 |
ccccatttatatggcctatattttgaaggaatttgctcatttataagctcttcaaaaggtttgacttcagcgtcatatcctgggaataaaaagaagggaa |
162 |
Q |
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| T |
34139333 |
ccccatttataaggcttatattttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatggaa |
34139432 |
T |
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| Q |
163 |
tagaaaacctttccttctctgtgctcagaatcgctctgtgctccacactctcataggcatcattgctccaaacctacaacaataaacccaattctcccgt |
262 |
Q |
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| T |
34139433 |
tagaaaatctttctttctccttgttcaccaatgctctgtgctccacactctcattggcatcattactccaaacctgtaacaataaactcaagtctctcgt |
34139532 |
T |
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| Q |
263 |
taaat |
267 |
Q |
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||||| |
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| T |
34139533 |
taaat |
34139537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 34130674 - 34130869
Alignment:
| Q |
42 |
tttctgtgaacaagaaactttccccatttatatggcctatattttgaaggaatttgctcatttataagctcttcaaaaggtttgacttcagcgtcatatc |
141 |
Q |
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| T |
34130674 |
tttctgttgacaagaaactttccccaattgtatggtctgtattttggagggttttcctcatttgtcagctcctcgagaggtttgactacagtgtcgtgtg |
34130773 |
T |
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| Q |
142 |
ctgggaataaaaagaagggaatagaaaacctttccttctctgtgctcagaatcgctctgtgctccacactctcataggcatcattgctccaaacct |
237 |
Q |
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| T |
34130774 |
cagggaagaaaaagaaggggattgaaaacctttctttctcagagttaaccatcactctgtgttccacactttcataagcatcattgctccaaacct |
34130869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 237
Target Start/End: Original strand, 34119455 - 34119540
Alignment:
| Q |
152 |
aaagaagggaatagaaaacctttccttctctgtgctcagaatcgctctgtgctccacactctcataggcatcattgctccaaacct |
237 |
Q |
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| T |
34119455 |
aaagaacggaatggaaaacctatccttctcagagttcaccattaccctgtgctctacactctcataagcatcattgctccaaacct |
34119540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 12381902 - 12381966
Alignment:
| Q |
153 |
aagaagggaatagaaaacctttccttctctgtgctcagaatcgctctgtgctccacactctcata |
217 |
Q |
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| T |
12381902 |
aagaatggaatggaaaacctttctttctttgtgtttacaaccactctgtgctccacactctcata |
12381966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 12385969 - 12386033
Alignment:
| Q |
153 |
aagaagggaatagaaaacctttccttctctgtgctcagaatcgctctgtgctccacactctcata |
217 |
Q |
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| T |
12385969 |
aagaatggaatggaaaacctttctttctttgtgtttacaaccactctgtgctccacactctcata |
12386033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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