View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18612_low_16 (Length: 276)
Name: NF18612_low_16
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 27444291 - 27444046
Alignment:
| Q |
16 |
atcacatcgaatatataaacaagaatttgctcaagcgtcaccgtcccacagctcttccaaggttttgtaaggtccactatcagatacaaacatttctacc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27444291 |
atcacatcgaatatataaacaagaatttgctcaagcgtcaccgtcccacagctcttccaaggttttgtaaggtccactatcagatacaaacatttctacc |
27444192 |
T |
|
| Q |
116 |
ttttgcagtctgcattgtggaatctgattgattttgtcgaattcttcttggttcaattcccaatcaaatatttcagtgtttagtttcatcctttccttgt |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27444191 |
ttttgcagtctgcattgcggaatctgattgattttgtcgaattcttcttggttcaattcccaatcaaatatttcagtgtttagtttcatcctttccttgt |
27444092 |
T |
|
| Q |
216 |
tgaagcttttcacaatgggaattgccccttgctggtatatccatct |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27444091 |
tgaagcttttcacaatgggaattgccccttgctggtatatccatct |
27444046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 32 - 261
Target Start/End: Complemental strand, 27430071 - 27429842
Alignment:
| Q |
32 |
aaacaagaatttgctcaagcgtcaccgtcccacagctcttccaaggttttgtaaggtccactatcagatacaaacatttctaccttttgcagtctgcatt |
131 |
Q |
| |
|
|||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| | ||||| || |
|
|
| T |
27430071 |
aaacaagagtttgctcaaacatcaccatcccacagctcttccaaggttttgtaaggtccattatcagatacaaatatttctgccttttgaaatctgcttt |
27429972 |
T |
|
| Q |
132 |
gtggaatctgattgattttgtcgaattcttcttggttcaattcccaatcaaatatttcagtgtttagtttcatcctttccttgttgaagcttttcacaat |
231 |
Q |
| |
|
| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27429971 |
gatgaatctgactgattttgtctaattcttcttggttcaattcccaatcaaatatttcaatgttttgtttcatcctttccttgttgaagcttttcacaat |
27429872 |
T |
|
| Q |
232 |
gggaattgccccttgctggtatatccatct |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27429871 |
gggaattgccccttgctggtatatccatct |
27429842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 27441499 - 27441258
Alignment:
| Q |
20 |
catcgaatatataaacaagaatttgctcaagcgtcaccgtcccacagctcttccaaggttttgtaaggtccactatcagatacaaacatttctacctttt |
119 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||| ||| || ||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
27441499 |
catcgaatatttaaacaagaattcgcttaagggtcgccatcccacagctcttccaatgacttgtaaggtccattatcagatacaaacatttctgccttta |
27441400 |
T |
|
| Q |
120 |
gcagtctgcattgtggaatctgattgattttgtcgaattcttcttggttcaattcccaatcaaatatttcagtgtttagtttcatcctttccttgttgaa |
219 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
27441399 |
gcagtctgcattgaggaatctgattaattttgtctaattcttcttggttcaattcccaatcaaatatttcaatgttttgtttcatcctctccttgttgaa |
27441300 |
T |
|
| Q |
220 |
gcttttcacaatgggaattgccccttgctggtatatccatct |
261 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27441299 |
gctcttcacaatgggaattaccccttgctggtatatccatct |
27441258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 34 - 231
Target Start/End: Original strand, 26910817 - 26911014
Alignment:
| Q |
34 |
acaagaatttgctcaagcgtcaccgtcccacagctcttccaaggttttgtaaggtccactatcagatacaaacatttctaccttttgcagtctgcattgt |
133 |
Q |
| |
|
|||||| | |||||||| |||||| ||||||||||||||||||| ||||||||||||| | ||||||| |||||||||| |||| | |||||||||||| |
|
|
| T |
26910817 |
acaagattctgctcaagggtcaccatcccacagctcttccaaggatttgtaaggtccattttcagataaaaacatttctgccttgtatagtctgcattgt |
26910916 |
T |
|
| Q |
134 |
ggaatctgattgattttgtcgaattcttcttggttcaattcccaatcaaatatttcagtgtttagtttcatcctttccttgttgaagcttttcacaat |
231 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||| |||||||||| || || ||||||||||||||||| |
|
|
| T |
26910917 |
ggaatcttattgattttgtccaattcttcttggttcaatttccaatcaaatatttcaaggttttgtttcatcctctctttcttgaagcttttcacaat |
26911014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University