View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_low_19 (Length: 260)
Name: NF18612_low_19
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_low_19 |
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| [»] chr8 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 79 - 260
Target Start/End: Complemental strand, 2983242 - 2983061
Alignment:
| Q |
79 |
ccttgatcaatcagtctcttgtttatgagcaagtacaaaataacacaataacaagaaaagaaatttaactaataatcattcacaaaatcaaaactcttaa |
178 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||| |
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| T |
2983242 |
ccttgatcaatcagtctcatgtttatgagcaagtacaaaataacacaataacaagaaaagaaagttaacttataatcattcagaaagtcaaaactcttaa |
2983143 |
T |
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| Q |
179 |
tatctagagcagccatcttcatgcatctccttcagtcttccatttcttttattgagcaagccagcttaacacaagcacacat |
260 |
Q |
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| T |
2983142 |
tatctagagcagccatcttcacgcatctccttcagtcttccatttcttttattgagcaagctagcttaaaacaagcacacat |
2983061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 2706245 - 2706426
Alignment:
| Q |
79 |
ccttgatcaatcagtctcttgtttatgagcaagtacaaaataacacaataacaagaaaagaaatttaactaataatcattcacaaaatcaaaactcttaa |
178 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| || ||||| |||| | || |
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| T |
2706245 |
ccttgatcaataggtcgcttgtttatgagcaagtacaaaataacacaaaaacaagaaaagaaaattaactaataatcatgcagaaaataaaaaacttgaa |
2706344 |
T |
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| Q |
179 |
tatctagagcagccatcttcatgcatctccttcagtcttccatttcttttattgagcaagccagcttaacacaagcacacat |
260 |
Q |
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| T |
2706345 |
tatctagagcagccatcttcacaaatcttttccagtcctccatttcttttattgagcaagctagattaacaaaagcacacat |
2706426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 2708729 - 2708839
Alignment:
| Q |
79 |
ccttgatcaatcagtctcttgtttatgagcaagtacaaaataacacaataacaagaaaagaaatttaactaataatcattcacaaaatcaaaactctt-a |
177 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||| |||| | |
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| T |
2708729 |
ccttgatcaatcagtctcttgtttatgagcaagtataaaataacacaataacaagaaaagaaaattaactaataatcattcagaaaat-aaaaatcttga |
2708827 |
T |
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| Q |
178 |
atatctagagca |
189 |
Q |
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|||||||||||| |
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| T |
2708828 |
atatctagagca |
2708839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 2992200 - 2992131
Alignment:
| Q |
191 |
ccatcttcatgcatctccttcagtcttccatttcttttattgagcaagccagcttaacacaagcacacat |
260 |
Q |
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| T |
2992200 |
ccatcttcacgcatctcctccagtcttccatgtcttttattgagccagctagcttaacacaagaacacat |
2992131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 260
Target Start/End: Original strand, 10752905 - 10753030
Alignment:
| Q |
136 |
aagaaatttaactaataatcattcacaaaatcaaaactcttaatatctagagcagccatcttcatgcatctccttcagtcttccatttc-ttttattgag |
234 |
Q |
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|||||| || ||||||||||||||| |||| ||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| ||| |
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| T |
10752905 |
aagaaaatttactaataatcattcagaaaaccaaaact-taaatatctagagcagccatcttcacgcatctacttcagtcttccatttctttttatcgag |
10753003 |
T |
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| Q |
235 |
caagc-cagcttaacacaagcacacat |
260 |
Q |
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| T |
10753004 |
caagcttagcttcaaacaagcacacat |
10753030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 18358580 - 18358518
Alignment:
| Q |
191 |
ccatcttcatgcatctccttcagtcttccatttcttttattgagcaagccagcttaacacaag |
253 |
Q |
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| T |
18358580 |
ccatcttcacgcatctcctccagtcttccatgtcttttattgagccagctagcttaacacaag |
18358518 |
T |
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