View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18612_low_24 (Length: 216)

Name: NF18612_low_24
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18612_low_24
NF18612_low_24
[»] chr1 (3 HSPs)
chr1 (81-200)||(9194023-9194143)
chr1 (4-82)||(9194206-9194284)
chr1 (111-200)||(37501428-37501517)
[»] chr5 (1 HSPs)
chr5 (4-82)||(8989428-8989506)
[»] chr4 (1 HSPs)
chr4 (92-200)||(10405789-10405897)
[»] chr3 (1 HSPs)
chr3 (125-200)||(32926101-32926175)
[»] chr8 (1 HSPs)
chr8 (94-175)||(42347495-42347576)


Alignment Details
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 81 - 200
Target Start/End: Complemental strand, 9194143 - 9194023
Alignment:
Q  81 gagtggaaacca-ccataattacattaattgctgacacttgggtgtggatagacaatttaaacggagaatacaaaacaaaaagtacatatcaccggctct 179  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||    
T  9194143 gagtggaaaccaaccataattacattaattgctgacccttgggtgtggatagacaatttaaacgaagaatacacaacaaaaagtgcatatcaccggctct 9194044  T
Q  180 tatctcggagggatggtattg 200  Q
    |||||||||||||||||||||    
T  9194043 tatctcggagggatggtattg 9194023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 9194284 - 9194206
Alignment:
Q  4 tcaagcatcctcttattaatgtggaacaaaatatctctcccgatcatttatgccttaagattaaggatttatgggatga 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9194284 tcaagcatcctcttattaatgtggaacaaaatatctctcccgatcatttatgccttaagattaaggacttatgggatga 9194206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 37501428 - 37501517
Alignment:
Q  111 ctgacacttgggtgtggatagacaatttaaacggagaatacaaaacaaaaagtacatatcaccggctcttatctcggagggatggtattg 200  Q
    ||||||||||||||||||  || |||||||| ||| |||||| ||||||||||   |||||  ||||||||||| ||||||||| |||||    
T  37501428 ctgacacttgggtgtggaacgataatttaaatggaaaatacacaacaaaaagtgtgtatcattggctcttatcttggagggatgatattg 37501517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 8989428 - 8989506
Alignment:
Q  4 tcaagcatcctcttattaatgtggaacaaaatatctctcccgatcatttatgccttaagattaaggatttatgggatga 82  Q
    ||||| |||||||||||||| ||  ||||||||| | |||  |||||||||||||||||||||||||||||||||||||    
T  8989428 tcaagtatcctcttattaatatgatacaaaatatatttccaaatcatttatgccttaagattaaggatttatgggatga 8989506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 10405789 - 10405897
Alignment:
Q  92 accataattacattaattgctgacacttgggtgtggatagacaatttaaacggagaatacaaaacaaaaagtacatatcaccggctcttatctcggaggg 191  Q
    ||||||| ||| |||  |||||||||||||||||||| ||| |||||||| ||||||||||  |||||||||   |||| | |||||||||||||||||     
T  10405789 accataagtaccttatctgctgacacttgggtgtggaaagataatttaaatggagaatacacgacaaaaagtgtgtatcgctggctcttatctcggaggc 10405888  T
Q  192 atggtattg 200  Q
    ||| |||||    
T  10405889 atgttattg 10405897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 32926175 - 32926101
Alignment:
Q  125 tggatagacaatttaaacggagaatacaaaacaaaaagtacatatcaccggctcttatctcggagggatggtattg 200  Q
    |||| ||||||||||||||||||||||| | |||||||| |  ||||| ||||||||||||||||||||| |||||    
T  32926175 tggaaagacaatttaaacggagaatacacagcaaaaagtgc-gatcactggctcttatctcggagggatgatattg 32926101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 42347576 - 42347495
Alignment:
Q  94 cataattacattaattgctgacacttgggtgtggatagacaatttaaacggagaatacaaaacaaaaagtacatatcaccgg 175  Q
    |||| |||||| ||||| ||||| ||| ||||||| |||||||||||| |||||||||| | |||||| | |||| ||||||    
T  42347576 catatttacatcaattgatgacatttgagtgtggaaagacaatttaaatggagaatacacaccaaaaaatgcataacaccgg 42347495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University