View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_low_3 (Length: 731)
Name: NF18612_low_3
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 686; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 17 - 722
Target Start/End: Original strand, 27261641 - 27262346
Alignment:
| Q |
17 |
aataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggatgaagctattatgattctattcaatgttggacaagttgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261641 |
aataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggatgaagctattatgattctattcaatgttggacaagttgt |
27261740 |
T |
|
| Q |
117 |
aacttctaagtgatgatgatattccactttcgcattgtttatgcagtgttgtatgcatcattatattttttctagaatgtatgggatttttgttgagaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261741 |
aacttctaagtgatgatgatattccactttcgcattgtttatgcagtgttgtatgcatcattatattttttctagaatgtatgggatttttgttgagaat |
27261840 |
T |
|
| Q |
217 |
ttgtagatgccctaagtaacgatattccgattttacattgttgataaaatattgtatgtttcattgtaataatctattgagtcttattttttgttgcttg |
316 |
Q |
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| T |
27261841 |
ttgtagatgccctaagtaacgatattccgattttacattgttgataaaatattgtatgtttcattgtaataatctattgagtcttattttttgttgcttg |
27261940 |
T |
|
| Q |
317 |
tgtgtggatgcagaaaacaattgcttcaccaggacgtggtattttggccatggatgagtccaatgctacttgtgggaaaagtttggcttccattgggcta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27261941 |
tgtgtggatgcagaaaacaattgcttcaccaggacgtggtattttggccatggatgagtccaatgctacttgtgggaaaagtttggcttcaattgggcta |
27262040 |
T |
|
| Q |
417 |
gagaacaccgaagttaaccgcccagcatggcgtactcttctggtgacagttccatctcttggagagtacatctctggtgccattctctttgaggagactc |
516 |
Q |
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| T |
27262041 |
gagaacaccgaagttaaccgcccagcatggcgtactcttctggtgacagttccatctcttggagagtacatctctggtgccattctctttgaggagactc |
27262140 |
T |
|
| Q |
517 |
tctaccaatccacaacagatggaaggaagattgtcgatgtacttattgagtaaaacattgttcctggtattaaagttgacaaggtatatctagaattact |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
27262141 |
tctaccaatccacaacagatggaaggaagattgtggatgtacttattgagtaaaacattgttcctgatattaaagttgacaaggtatatctggaattact |
27262240 |
T |
|
| Q |
617 |
ctatgtaactacattttttgttagatgatgaattttcaatttgtactatgctgaacaaataatgcaaagaataagaccgagtgctagttgataccatgat |
716 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27262241 |
ctatgtaactacattttttgttagatgatgaattttcaatttgtactatgctgaacaaataatgcaaagaataagaccgagtgctagttgataccattat |
27262340 |
T |
|
| Q |
717 |
gatgtc |
722 |
Q |
| |
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|||||| |
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| T |
27262341 |
gatgtc |
27262346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 247 - 602
Target Start/End: Original strand, 27250043 - 27250397
Alignment:
| Q |
247 |
ttttacattgttgataaaatattgtatgtttcattgtaataatctattgagtcttattttttgttgcttgtgtgtggatgcagaaaacaattgcttcacc |
346 |
Q |
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|||||||| |||| | |||||| ||||||||||||| |||| | ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27250043 |
ttttacatcgttgtttcaatattttatgtttcattgttctaatttcttgtgtcttgtttt-tgttgcttgtgtgtggatgcagaaaacaattgcttcacc |
27250141 |
T |
|
| Q |
347 |
aggacgtggtattttggccatggatgagtccaatgctacttgtgggaaaagtttggcttccattgggctagagaacaccgaagttaaccgcccagcatgg |
446 |
Q |
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||| ||||||||||| ||||||||||| ||||||||||| ||||| || |||||||||| ||||||||||| ||||| |||| |||||||| ||||||| |
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| T |
27250142 |
agggcgtggtattttagccatggatgaatccaatgctacatgtggaaagcgtttggcttcaattgggctagaaaacactgaagctaaccgccaagcatgg |
27250241 |
T |
|
| Q |
447 |
cgtactcttctggtgacagttccatctcttggagagtacatctctggtgccattctctttgaggagactctctaccaatccacaacagatggaaggaaga |
546 |
Q |
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| T |
27250242 |
cgtacccttcttgtgacagttccatctcttggagactatatctctggtgccattctttttgaggaaactctctaccaatctacagttgatggaaggaaga |
27250341 |
T |
|
| Q |
547 |
ttgtcgatgtacttattgagtaaaacattgttcctggtattaaagttgacaaggta |
602 |
Q |
| |
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|||| || || ||||| ||| |||||||||||||||| || ||||||||||||||| |
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| T |
27250342 |
ttgttgacgtgcttatcgagcaaaacattgttcctggaatcaaagttgacaaggta |
27250397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 264 - 602
Target Start/End: Original strand, 21194287 - 21194624
Alignment:
| Q |
264 |
aatattgtatgtttcattgtaataatctattgagtcttattttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccaggacgtggtattttgg |
363 |
Q |
| |
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|||||| ||||||||||||| |||| | ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
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| T |
21194287 |
aatattttatgtttcattgttctaatttcttgtgtcttgtttt-tgttgcttgtgtgtggatgcagaaaacaattgcttcaccagggcgtggaattttag |
21194385 |
T |
|
| Q |
364 |
ccatggatgagtccaatgctacttgtgggaaaagtttggcttccattgggctagagaacaccgaagttaaccgcccagcatggcgtactcttctggtgac |
463 |
Q |
| |
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|||||||||| ||||||||||| ||||| || |||||||||| ||||||||||| ||||| |||| |||||||| |||||||||||| ||||| ||||| |
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| T |
21194386 |
ccatggatgaatccaatgctacatgtggaaagcgtttggcttcaattgggctagaaaacactgaagctaaccgccaagcatggcgtacccttcttgtgac |
21194485 |
T |
|
| Q |
464 |
agttccatctcttggagagtacatctctggtgccattctctttgaggagactctctaccaatccacaacagatggaaggaagattgtcgatgtacttatt |
563 |
Q |
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|||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||| || || ||||| |
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| T |
21194486 |
agttccatctcttggagactatatctctggtgccattctatttgaggaaactctctaccaatctacagttgatggaaggaagattgttgacgtgcttatc |
21194585 |
T |
|
| Q |
564 |
gagtaaaacattgttcctggtattaaagttgacaaggta |
602 |
Q |
| |
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||| |||||||||||||||| || ||||||||||||||| |
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| T |
21194586 |
gagcaaaacattgttcctggaatcaaagttgacaaggta |
21194624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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