View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_low_4 (Length: 602)
Name: NF18612_low_4
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 45000255 - 45000041
Alignment:
| Q |
1 |
ttggagtcattcaacattattaatttgaataatagttcaaatttgtcttcacaaaaaacacaatattacatatctgcttcaacaaaaaatacaaattcaa |
100 |
Q |
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| T |
45000255 |
ttggagtcattcaacattattaatttgaataatagttcaagtttgtcttcacaaaaaacacaatattacatatctgcttcaacaaaaaatacaaattcga |
45000156 |
T |
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| Q |
101 |
ttattaaaagtctcaaattattttaccaagtactccttttttatatataccagtagttattttttccatataaaatatactattatttgctttggttgct |
200 |
Q |
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| T |
45000155 |
ttattaaaagtctcaaattattttaccaagtactccctttatatatataccagtagttattttttccatataaaatatactattatttgctttggttgct |
45000056 |
T |
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| Q |
201 |
agaagttttgcggct |
215 |
Q |
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| T |
45000055 |
agaagttttgcggct |
45000041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 273 - 517
Target Start/End: Complemental strand, 44999983 - 44999751
Alignment:
| Q |
273 |
gcaaaaatggcaagctatctgtaggtccagtatatcgcaaccttctagctaaagatcaatttccaccatctgatcctgatttaactacagcttgggatat |
372 |
Q |
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| T |
44999983 |
gcaaaaatggcaagctatctgtaggtccagtatatcgcaaccttctagctaaagatcaatttccaccatctgatcctgatttaactacagcttgggatat |
44999884 |
T |
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| Q |
373 |
tttcaggtatatgatatttttcatgcnnnnnnngttggttttaaattgagttacgacgttgttgaccacaatttaaaactatgcttagaatatactataa |
472 |
Q |
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| T |
44999883 |
tttcaggtatatg-ta-----------aaaaaagttggttttaaattgagttacgacgttgttgaccacaatttaaaactatgcttagaatatactataa |
44999796 |
T |
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| Q |
473 |
attgatcaaagagtaatgataattaactttcctaatgagcttcct |
517 |
Q |
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| T |
44999795 |
attgatcaaagagtaatgataattaactttcctaatgagcttcct |
44999751 |
T |
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