View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18612_low_5 (Length: 558)

Name: NF18612_low_5
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18612_low_5
NF18612_low_5
[»] chr1 (1 HSPs)
chr1 (42-537)||(39379625-39380119)
[»] chr4 (9 HSPs)
chr4 (109-317)||(3564787-3564992)
chr4 (109-294)||(3556769-3556954)
chr4 (144-299)||(3573456-3573610)
chr4 (131-294)||(1687154-1687317)
chr4 (340-418)||(3573296-3573374)
chr4 (340-409)||(3565059-3565128)
chr4 (344-418)||(1686950-1687024)
chr4 (341-418)||(3557042-3557119)
chr4 (175-295)||(3561795-3561915)
[»] scaffold0242 (2 HSPs)
scaffold0242 (174-274)||(14556-14656)
scaffold0242 (174-274)||(23391-23491)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 42 - 537
Target Start/End: Complemental strand, 39380119 - 39379625
Alignment:
Q  42 ctcatttcacaatttcaacggttcaatataacactccggcgaaggtgcattggcattggaaatcgttaacaatcagcgatgactacaactccgtcgccgg 141  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39380119 ctcatttcacactttcaacagttcaatatatcactccggcgaaggtgcattggcattggaaatcgttaacaatcagcgatgactacaactccgtcgccgc 39380020  T
Q  142 tgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcat 241  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39380019 tgtttttctccgacgatcttctcaccgagatcctttcgttacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcat 39379920  T
Q  242 ttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaacacttcacactcataactgaataccctgataatgtttatgag 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||    
T  39379919 ttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaacacttcacactcataactgaataccctgataatgatta-cag 39379821  T
Q  342 tatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattgagccaaaaagattgttctcgttta 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39379820 tatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattgagccagaaagattgttctcgttta 39379721  T
Q  442 gtcggttcctgtaatggatttatctgtttagttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatgg 537  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379720 gtcggttcctgtaatggattggtctgtttagttggtgatcgttacgcttatggttccggtttagcctcatgttatgagtactggttccgtttatgg 39379625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 109 - 317
Target Start/End: Original strand, 3564787 - 3564992
Alignment:
Q  109 aacaatcagcgatgactacaactccgtcgccggtgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgatt 208  Q
    |||||||||| ||| ||||   ||| ||||||| |||||||||||| ||||| ||| ||  |||||| || ||||||||||||||||| || ||||| ||    
T  3564787 aacaatcagccatgtctactcgtccatcgccggcgttcttctccgatgatctcctcgccgtgatcctctcgttacttcctgtaaaatcacttcttcgttt 3564886  T
Q  209 caaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaacacttcaca 308  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||  ||| ||||| |||||||| ||||   ||| ||||||||    
T  3564887 caaatgtgtaagtaatccttggaacactctcatttccgatcccaattttgtgaaattccatctcatgaaatcaaaatcacaaaat---caatacttcaca 3564983  T
Q  309 ctcataact 317  Q
    || ||||||    
T  3564984 ctaataact 3564992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 109 - 294
Target Start/End: Original strand, 3556769 - 3556954
Alignment:
Q  109 aacaatcagcgatgactacaactccgtcgccggtgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgatt 208  Q
    |||||||||| ||| |||| | |||||||||||||||||||||||| ||||| |||  | ||||||||||||||||| |||| |||||||||||||||||    
T  3556769 aacaatcagccatgtctacgattccgtcgccggtgttcttctccgatgatctcctcgtcgagatcctttcattactttctgtgaaatctctacttcgatt 3556868  T
Q  209 caaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatc 294  Q
     | ||| ||||| ||  |||||||  |||| ||||| |||||||||||||| ||||| ||  |||||| || |||||||| |||||    
T  3556869 tagatgcgtaagtaagtcttggaacgctctaatttctgatcccaattttgtgaaattccatctcaagagatcaaaatcacaaaatc 3556954  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 144 - 299
Target Start/End: Complemental strand, 3573610 - 3573456
Alignment:
Q  144 ttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcattt 243  Q
    |||||||| |||||||| ||||| | | ||||||||||||||||||| ||||| || ||||| |||||||||||||| ||||||||||| ||||||||||    
T  3573610 ttcttctctgacgatctcctcacta-gttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt 3573512  T
Q  244 ccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaa 299  Q
    |||||||||||||  | |||||  |  ||||||||| |||||||| ||||||||||    
T  3573511 ccgatcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaa 3573456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 131 - 294
Target Start/End: Complemental strand, 1687317 - 1687154
Alignment:
Q  131 tccgtcgccggtgttcttctccgacgatcttctcaccaagatcctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttgg 230  Q
    ||||||||||||||||||||| || ||||| |||  | ||||||||||||||||| |||| |||||||| |||||||||| ||| ||||| ||  |||||    
T  1687317 tccgtcgccggtgttcttctctgatgatctcctcgtcgagatcctttcattactttctgtgaaatctctccttcgattcagatgcgtaagtaagtcttgg 1687218  T
Q  231 aaaactctcatttccgatcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatc 294  Q
    ||  |||| ||||| ||||||  |||||| ||||| ||  |||||| || |||||||| |||||    
T  1687217 aacgctctaatttctgatcccttttttgtgaaattccatctcaagagatcaaaatcacaaaatc 1687154  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 3573374 - 3573296
Alignment:
Q  340 agtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattga 418  Q
    |||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||| |||||| |||||| ||||||||    
T  3573374 agtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattga 3573296  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 340 - 409
Target Start/End: Original strand, 3565059 - 3565128
Alignment:
Q  340 agtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcact 409  Q
    |||||||||||||| |||||||||||| ||||||||||||| || |||||  ||||||||||||||||||    
T  3565059 agtatcattccatatcctatacctcgtttactcgataacccgtcatttacggttgttgctgatcctcact 3565128  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 418
Target Start/End: Complemental strand, 1687024 - 1686950
Alignment:
Q  344 tcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattga 418  Q
    |||||||||| |||||| || || ||||||||||||  ||| |||||||||||||||||||||||| ||||||||    
T  1687024 tcattccatatcctatatcttgtttactcgataacctgtcgattacccttgttgctgatcctcactctctattga 1686950  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 3557042 - 3557119
Alignment:
Q  341 gtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattga 418  Q
    |||||||||||||||||||||| ||| ||||||||||||| || ||||||||| |  ||||||||| || ||||||||    
T  3557042 gtatcattccataccctataccccgtttactcgataacccgtcctttacccttatcactgatcctcgctctctattga 3557119  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 295
Target Start/End: Complemental strand, 3561915 - 3561795
Alignment:
Q  175 tttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttcaa 274  Q
    |||| ||||||||  ||||||||||| ||||||||||||||||||| ||   |||||| ||||||||||| |||||    || || ||||| ||| ||||    
T  3561915 tttcgttacttcccataaaatctctaattcgattcaaatgtgtaagtaaatattggaacactctcatttcggatccttccttcgtgaaattacacctcaa 3561816  T
Q  275 gaaattaaaatcacgaaatcc 295  Q
    ||||| || | ||||||||||    
T  3561815 gaaatcaacaacacgaaatcc 3561795  T

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Target: scaffold0242 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 14656 - 14556
Alignment:
Q  174 ctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttca 273  Q
    ||||| || ||||| || ||||||||  |||||||||||||||| | |||  |||||||||| || || || ||||||| |||||| ||||| ||| |||    
T  14656 ctttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctgatcccacttttgtgaaattacacctca 14557  T
Q  274 a 274  Q
    |    
T  14556 a 14556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 23491 - 23391
Alignment:
Q  174 ctttcattacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccgatcccaattttgtcaaatttcacttca 273  Q
    ||||| || ||||| || ||||||||  |||||||||||||||| | |||  |||||||||| || || || ||||||| |||||| ||||| ||| |||    
T  23491 ctttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctgatcccacttttgtgaaattacacctca 23392  T
Q  274 a 274  Q
    |    
T  23391 a 23391  T

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