View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18612_low_6 (Length: 519)
Name: NF18612_low_6
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 4 - 502
Target Start/End: Complemental strand, 22894337 - 22893839
Alignment:
| Q |
4 |
agggacatatcccaaccatgagttaaaaccaaacttttttctactatcactaggctatggacaacaataatcttagttcttt-aataaagggaacaacac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |
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|
| T |
22894337 |
agggacatatcccaaccatgagttaaaaccaaacttttttctactaccactaggctatggacaagaataatcttagttcttttaataaaaggaacaacac |
22894238 |
T |
|
| Q |
103 |
aattggacatagtggatgaaatgtctacgcagtctggaataatattttatatctcaatcatgcaaatcagaccttggatacatttcattgtgactttaga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22894237 |
aattggacatagtggatgaaatgtctacgcagtctggaataatattttatatctcaatcatccaaatcagaccttggatacatttcattgtgactttaga |
22894138 |
T |
|
| Q |
203 |
atcagtttctatgaggacgtgcccattttgatttgttgtgaggatccattggagacaccgctgtagagctaatacttcggccaaagcagaggatagttgc |
302 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22894137 |
atcagtttctacgaggacgtgtccattttgatttgttgtgaggatccattggagacaccgctgtagagctaatacttcggccaaagcagaggatagtggc |
22894038 |
T |
|
| Q |
303 |
cttcattctagttttgttgcaacaaattctataaatcttatacagtatctagactactatctcattgtatcatccttgaagcatcttgcatccacgttaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22894037 |
cttcattctagttttgttgcaacaaattctataaatcttatacagtatctagactactatctcattgtatcatccttgaagcatcttgcatccacgttaa |
22893938 |
T |
|
| Q |
403 |
gattcagattcatcacaacagaaatggtttgtacaattaagctttgaagtgaactcacaacataaatcaaatgtaatttagagaccaagaaacctagaag |
502 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22893937 |
gattcagattcatcacaacagaaatgg-ttgtacaattgagctttgaagtgaactcacaacataaatcaaatgtaatttagagaccaagaaacctagaag |
22893839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 4 - 502
Target Start/End: Complemental strand, 195447 - 194955
Alignment:
| Q |
4 |
agggacatatcccaaccatgagttaaaaccaaacttttttctactatcactaggctatggacaacaataatcttagttcttt-aataaagggaacaacac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||||||| ||| || | | |||||| |
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|
| T |
195447 |
agggacatatcccaaccatgagttaaaaccaatttttttt-tactctcactaggctatggacaacaacaatcttagttcttttaattaaagtatcaacac |
195349 |
T |
|
| Q |
103 |
aattggacatagtggatgaaatgtctacgcagtctggaataatattttatatctcaatcatgcaaatcagaccttggatacatttcattgtgactttaga |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
195348 |
aattggacatagtggataaaatgtctacgtagtctggaataatattttatatctcaaccatccaaatcagaccttggatacatttcactgtgactttaga |
195249 |
T |
|
| Q |
203 |
atcagtttctatgaggacgtgcccattttgatttgttgtgaggatccattggagacaccgctgtagagctaatacttcggccaaagcagaggatagttgc |
302 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| ||||| || |||| |
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|
| T |
195248 |
atcagtttctatgaggaagtgtccattttgatttgttgtgaggatccattggagacaccactgaagagctaatgcttcggccaaagtagaggctaattgc |
195149 |
T |
|
| Q |
303 |
cttcattctagttttgttgcaacaaattctataaatcttatacagtatctagactactatctcattgtatcatccttgaagcatcttgcatccacgttaa |
402 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||| |||| || | |
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|
| T |
195148 |
cttcgttctagttttgttgcagcaaattctataaatcctctatagtctctagactactatctcattgtatcatccttgaagcatcctgcagacatg---- |
195053 |
T |
|
| Q |
403 |
gattcagattcatcacaacagaaatggtttgtacaattaagctttgaagtgaactcacaacataaatcaaatgtaatttagagaccaagaaacctagaag |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
195052 |
--ttcagattcatcacaacagaaatggtttgtacaattgagctttgaagtgaactcacaacagaaatcaaatgtaatttagagaccaagagacctagaag |
194955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 4 - 495
Target Start/End: Complemental strand, 19534851 - 19534365
Alignment:
| Q |
4 |
agggacatatcccaaccatgagttaaaaccaaacttttttctactatcactaggctatggacaacaataatcttagttcttt-aataaagggaacaacac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| | |||||||| |
|
|
| T |
19534851 |
agggacatatcccaaccatgagttaaaaccaaacttttttctactctcactaggctatggacaacaacaatcttagttcttttaataaaagtaacaacac |
19534752 |
T |
|
| Q |
103 |
aattggacatagtggatgaaatgtctacgcagtctggaataatattttatatctcaatcatgcaaatcagaccttggatacatttcattgtgactttaga |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| | |||||||||| ||||||| |||| |
|
|
| T |
19534751 |
aattggacatagtggataaaatgtctacgcagtctaaaataatattttatatctcaaccatccaaatcagacctggaatacatttcactgtgactctaga |
19534652 |
T |
|
| Q |
203 |
atcagtttctatgaggacgtgcccattttgatttgttgtgaggatccattggagacaccgctgtagagctaatacttcggccaaagcagaggatagttgc |
302 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||| | |
|
|
| T |
19534651 |
atcagtttctatgaggaagtgtccattttgatttgttgtgaggatctattggagacaccactgaagagctaatgcttcggccaaagcagaggatagtttc |
19534552 |
T |
|
| Q |
303 |
cttcattctagttttgttgcaacaaattctataaatcttatacagtatctagactactatctcattgtatcatccttgaagcatcttgcatccacgttaa |
402 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||| | |||||| |||| |||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
19534551 |
cttcgttctagttttgttgtagcaaattctataaatcctctacagtctctatactactatctcactgtatcatccttgaagcatcctgcatccacg---- |
19534456 |
T |
|
| Q |
403 |
gattcagattcatcacaacagaaatggtttgtacaattaagctttgaagtgaactcacaacataaatcaaatgtaatttagagaccaagaaac |
495 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| ||||| |||| |||| |||||||||||||| |
|
|
| T |
19534455 |
--ttcagattcatcacaatagaaatggtttgtacaattgaactttgaagtgaactcacaacagaaatctaatgcaattaagagaccaagaaac |
19534365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 4 - 333
Target Start/End: Complemental strand, 23684112 - 23683780
Alignment:
| Q |
4 |
agggacatatcccaaccatgagttaaaaccaaactttttt-ctactatcactaggctatggacaacaataatcttagttct-ttaataaagggaacaaca |
101 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||| |||| ||||| ||||||||||||| || || | || ||||| | |||||||| | |||| | |
|
|
| T |
23684112 |
agggacatatcccacccatgagttagaatcaaactgttttgctactcccactaggctatgggcagcaccattcatagttttcttaataaaagcaacagta |
23684013 |
T |
|
| Q |
102 |
caattggacatagtggatgaaatgtctacgcagtctggaataatattttatatctcaatcatgcaaatcagaccttggatacatttcattgtgactttag |
201 |
Q |
| |
|
|||||||| | ||||||| ||||||||| ||||||| |||||||||||| |||| || ||| | || ||||||||||||||||||| ||||||| | |
|
|
| T |
23684012 |
caattggaaagagtggataaaatgtctatgcagtctagaataatattttctatcccagccatccgaacgagaccttggatacatttcacggtgacttcaa |
23683913 |
T |
|
| Q |
202 |
aatcagtttctatgaggacgtgcccattttgatttgttgtgaggat-ccattggagacaccgctgtagagctaatacttcggccaaagcagaggatagtt |
300 |
Q |
| |
|
|||||||||| ||||||| || ||| |||||||||||||||||| ||||| |||||||| | | ||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
23683912 |
aatcagtttcaatgaggaactgtccaccttgatttgttgtgaggattccattagagacaccaccgaagagctaatgcttcggtcaaagtagaggatagtt |
23683813 |
T |
|
| Q |
301 |
gccttcattctagttttgttgcaacaaattcta |
333 |
Q |
| |
|
|||||| |||| |||||| | || ||||||||| |
|
|
| T |
23683812 |
gccttcgttctggttttgatacagcaaattcta |
23683780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 47290645 - 47290466
Alignment:
| Q |
4 |
agggacatatcccaaccatgagttaaaaccaaacttttttctactatcactaggctatggacaacaataatcttagttcttt-aataaagggaacaacac |
102 |
Q |
| |
|
||||||||||| || |||||||||| |||||||| ||||||||| ||||||||||||| |||||| |||||||||||||| |||||| ||| || |
|
|
| T |
47290645 |
agggacatatctcacccatgagttagaaccaaacctttttctacccccactaggctatgggcaacaacaatcttagttcttttaataaaaattacagtac |
47290546 |
T |
|
| Q |
103 |
aattggacatagtggatgaaatgtctacgcagtctggaataatattttatatctcaatcatgcaaatcagaccttggata |
182 |
Q |
| |
|
||||||||| | | ||| ||||||||| ||| ||| ||||||||||||| ||||||| ||| ||||| |||||||||||| |
|
|
| T |
47290545 |
aattggacagattagataaaatgtctatgcaatctagaataatattttacatctcaaccatccaaataagaccttggata |
47290466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 39176095 - 39175987
Alignment:
| Q |
225 |
ccattttgatttgttgtgaggatccattggagacaccgctgtagagctaatacttcggccaaagcagaggatagttgccttcattctagttttgttgcaa |
324 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||| || |||||| ||||||||| ||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
39176095 |
ccatcttgatttgttgtgaggatccattggagacaccactgaagggctaatgcttcggccatagcagggaatagttgccttcgttctagttttgttgcag |
39175996 |
T |
|
| Q |
325 |
caaattcta |
333 |
Q |
| |
|
||||||||| |
|
|
| T |
39175995 |
caaattcta |
39175987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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