View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18612_low_7 (Length: 491)
Name: NF18612_low_7
Description: NF18612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18612_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 12635845 - 12635377
Alignment:
| Q |
1 |
agggaacacgaagagaagttaataactcttgtgagagagcgaacaccattgaagaagaaactcaaaaggagttttggattgacggatttgtggtggatat |
100 |
Q |
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| T |
12635845 |
agggaacacgaagagaagttaataactcttgtgagagagcgaacaccatcgaagaaaaaactcaaaaggagttttggattgacggatttgtggtggatat |
12635746 |
T |
|
| Q |
101 |
ctagggtaggtaaacacaatattggatagtgattatatttgagagaggaaagaagataaattaataaggatttctcttggtaggaaattgaagatgattt |
200 |
Q |
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| T |
12635745 |
ctagggtaggtaaacgcaatattggatagtgattatatttgagagaggaaagaagataaattaataaggatt-ctcttggtaggaaattgaagatgattt |
12635647 |
T |
|
| Q |
201 |
tgggcgccaatgtatggtggccgttgatttcaatctatgctaatctcaaccattccatatgttataatgactggcgtgtttccaatgcagtaaataccaa |
300 |
Q |
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| T |
12635646 |
tgggcgccaatgtatggtggccgttgatttcaatctatgctaatctcaaccattccatatgttataatgactggcgtgtttccaatgcagtaaataccaa |
12635547 |
T |
|
| Q |
301 |
tgagctttgtaattaccatcataaaagcagtgctccccttcaggttccaataaacatcataccctctttccattcacttcagtaacataatagaggcccc |
400 |
Q |
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| T |
12635546 |
tgagctttgtaattaccatcataaaagcagtgctccccttcaggttccaataaacatcataccctctttccattcacttcagtaacataatagaggcccc |
12635447 |
T |
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| Q |
401 |
tatgtcaataaagtcactccaagaattgtatcagtaagaagataaccagttttaacgttgcccatggttc |
470 |
Q |
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| T |
12635446 |
tatgtcaataaagtcactccaagaattgtatcagtaagaagataaccagttttaacgttgcccatggttc |
12635377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 38511257 - 38511200
Alignment:
| Q |
194 |
atgattttgggcgccaatgtatggtggccgttgatttcaatctatgctaatctcaacc |
251 |
Q |
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| T |
38511257 |
atgattttgggcgccaatgtttggtggccgttgatttcaatctatgctaatctcaacc |
38511200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 37222999 - 37222948
Alignment:
| Q |
199 |
tttgggcgccaatgtatggtggccgttgatttcaatctatgctaatctcaac |
250 |
Q |
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| T |
37222999 |
tttgggcgccaatgtttgatggccgttaatttcaatttatgctaatctcaac |
37222948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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