View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18613_high_1 (Length: 656)
Name: NF18613_high_1
Description: NF18613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18613_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 4520034 - 4520345
Alignment:
| Q |
19 |
caaacagtgtagaaaaattgaaaatagagaaggtaacagcaagaaaatagcataagcaatgttacctttttgctacttttgagtgctaaatttgtgacag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| |
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| T |
4520034 |
caaacagtgtagaaaaattgaaaatagagaaggtaacagcaagaaaatagcataagcaatgtttcatttttgctacttttgagtgctaaacttgtgacag |
4520133 |
T |
|
| Q |
119 |
aaatcatgaaaattaaccgatgttatacttatctcacacagacatatggatacattctaagtagtttaatattcagtgtctgtctcaaacagtagcagac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520134 |
aaatcatgaaaattaaccgatgttatacttatctcacacagacatatggatacattctaagtagtttaatattcagtgtctgtctcaaacagtagcagac |
4520233 |
T |
|
| Q |
219 |
accacaactattcttgaattttccattataattgttttaaggatcgttgaatgattctaaaacataaatgaatttatcacaaacaaagtaaacacttcct |
318 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520234 |
accacaactgttcttgaactttccattataattgttttaaggatcgttgaatgattctaaaacataaatgaatttatcacaaacaaagtaaacacttcct |
4520333 |
T |
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| Q |
319 |
ataaatttgttt |
330 |
Q |
| |
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|||||||||||| |
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| T |
4520334 |
ataaatttgttt |
4520345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 329 - 652
Target Start/End: Original strand, 4520377 - 4520700
Alignment:
| Q |
329 |
ttttcaagacatcaacacagataaaaagatacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgaca |
428 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520377 |
ttttcaagacatcaacacaaataaaaagatacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgaca |
4520476 |
T |
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| Q |
429 |
gtaaaacagagaaagttgtgcacaaatacagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatnnnnnnn |
528 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520477 |
gtaaaacagagaaagttgtgcacaaatacagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatccccccg |
4520576 |
T |
|
| Q |
529 |
gatgccttctacgtcttgcagatgggaatattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaattgaagaaattaaa |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4520577 |
gatgccttctacgtcttgcagatgggaatattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaactgaagaaattaaa |
4520676 |
T |
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| Q |
629 |
agtctccttctccctttgctactc |
652 |
Q |
| |
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||||||||||| |||||| ||||| |
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| T |
4520677 |
agtctccttcttcctttggtactc |
4520700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 192 - 330
Target Start/End: Original strand, 8152424 - 8152567
Alignment:
| Q |
192 |
cagtgtctgtctcaaacagtagcagacaccacaactattcttgaattttccattataattgttttaaggatcgttgaatgattctaaaacataaatgaat |
291 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| || ||||||| ||||||| |||||||||| |||| |
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| T |
8152424 |
cagtgtctgtctcaaacagtagcagacaccacaactgttcttgaactttccattataactgtttcaatgatcgttcaatgattttaaaacataagtgaac |
8152523 |
T |
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| Q |
292 |
ttatcacaaacaaagta-----aacacttcctataaatttgttt |
330 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| |
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| T |
8152524 |
ttatcacaaacaaagtataaagaacacttcgtataaatttgttt |
8152567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 8152599 - 8152635
Alignment:
| Q |
329 |
ttttcaagacatcaacacagataaaaagatacttaca |
365 |
Q |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
8152599 |
ttttcaagacatcaacacaaataaaaagatacttaca |
8152635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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