View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18613_high_7 (Length: 278)

Name: NF18613_high_7
Description: NF18613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18613_high_7
NF18613_high_7
[»] chr2 (13 HSPs)
chr2 (20-251)||(8395538-8395769)
chr2 (20-251)||(8405803-8406034)
chr2 (20-251)||(8375855-8376083)
chr2 (36-263)||(8431078-8431302)
chr2 (20-251)||(8411923-8412151)
chr2 (20-251)||(8434021-8434249)
chr2 (88-251)||(8439085-8439248)
chr2 (20-216)||(8417004-8417197)
chr2 (83-248)||(8417201-8417366)
chr2 (75-206)||(8368226-8368357)
chr2 (75-206)||(8401053-8401184)
chr2 (75-206)||(8422630-8422761)
chr2 (94-208)||(8403918-8404032)
[»] chr4 (2 HSPs)
chr4 (97-251)||(55336242-55336396)
chr4 (81-251)||(55330788-55330958)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 8395769 - 8395538
Alignment:
Q  20 cagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactaccattaccaataaatgtagatccaatagctgcaattcctgtgagcaatgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8395769 cagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactaccattgccaataaatgtagatccaatagctgcaattcctgtgagcaatgg 8395670  T
Q  120 ccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctctttatcacttcaacaacttccctc 219  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |||||||  |||| ||| |||||||||||||||    
T  8395669 ccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgttttaccacgtcaacaacttccctc 8395570  T
Q  220 atttccatttctaattcttcactccatccatt 251  Q
    ||||||||||| ||||||||||||||||||||    
T  8395569 atttccatttccaattcttcactccatccatt 8395538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 8405803 - 8406034
Alignment:
Q  20 cagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactaccattaccaataaatgtagatccaatagctgcaattcctgtgagcaatgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8405803 cagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactaccattgccaataaatgtagatccaatagctgcaattcctgtgagcaatgg 8405902  T
Q  120 ccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctctttatcacttcaacaacttccctc 219  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |||||||  |||| ||| |||||||||||||||    
T  8405903 ccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgttttaccacgtcaacaacttccctc 8406002  T
Q  220 atttccatttctaattcttcactccatccatt 251  Q
    ||||||||||| ||||||||||||||||||||    
T  8406003 atttccatttccaattcttcactccatccatt 8406034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 8376083 - 8375855
Alignment:
Q  20 cagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactaccattaccaataaatgtagatccaatagctgcaattcctgtgagcaatgg 119  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||| ||   |||| | |||||| ||||||||||||||||||||||||||||||||    
T  8376083 cagaagccaatgaaccagccaaaagaggaacaaaagcagccaaagaaccac---tacctacaaatgtcgatccaatagctgcaattcctgtgagcaatgg 8375987  T
Q  120 ccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctctttatcacttcaacaacttccctc 219  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  8375986 ccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgtcttttctctttatcacttcaacaacttccctc 8375887  T
Q  220 atttccatttctaattcttcactccatccatt 251  Q
    ||||||||||| ||||||| |||||| |||||    
T  8375886 atttccatttccaattctttactccacccatt 8375855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 36 - 263
Target Start/End: Original strand, 8431078 - 8431302
Alignment:
Q  36 agccaagagaggaacaaatgcagccaaagaactaccattaccaataaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaa 135  Q
    |||||| ||||||||||| |||||||||||||||   || ||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  8431078 agccaatagaggaacaaaagcagccaaagaacta---ttgccaataaatgtagatcctatagctgcaattcctgagagtaatggccctgcaattgccaaa 8431174  T
Q  136 ctcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctctttatcacttcaacaacttccctcatttccatttctaatt 235  Q
    |||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8431175 ctcttgtttaccttcaatgctatgtttccaagtctatcataatcttcaacgtcttttctctttatcacttcaacaacatccctcatttccatttctaatt 8431274  T
Q  236 cttcactccatccattcatttttcctat 263  Q
    ||||||||||| | ||||||||||||||    
T  8431275 cttcactccattcgttcatttttcctat 8431302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 8411923 - 8412151
Alignment:
Q  20 cagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactaccattaccaataaatgtagatccaatagctgcaattcctgtgagcaatgg 119  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||   || || | ||||||||||||||| ||||||||||||||||| |||||    
T  8411923 cagaagccaatgaaccagtcaatagaggaacaaatgcagccaaagaacta---ttgcctacaaatgtagatccaattgctgcaattcctgtgagtaatgg 8412019  T
Q  120 ccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctctttatcacttcaacaacttccctc 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| | ||||||  |    
T  8412020 ccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctcttgatcacttcagcgacttcctgc 8412119  T
Q  220 atttccatttctaattcttcactccatccatt 251  Q
    ||||||||||||||||||||||||||||||||    
T  8412120 atttccatttctaattcttcactccatccatt 8412151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 8434021 - 8434249
Alignment:
Q  20 cagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactaccattaccaataaatgtagatccaatagctgcaattcctgtgagcaatgg 119  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||   || || | ||||||||||||||| ||||||||||||||||| |||||    
T  8434021 cagaagccaatgaaccagtcaatagaggaacaaatgcagccaaagaacta---ttgcctacaaatgtagatccaattgctgcaattcctgtgagtaatgg 8434117  T
Q  120 ccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctctttatcacttcaacaacttccctc 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| | ||||||  |    
T  8434118 ccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctcttgatcacttcagcgacttcctgc 8434217  T
Q  220 atttccatttctaattcttcactccatccatt 251  Q
    ||||||||||||||||||||||||||||||||    
T  8434218 atttccatttctaattcttcactccatccatt 8434249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 8439085 - 8439248
Alignment:
Q  88 gatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacat 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |    
T  8439085 gatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgt 8439184  T
Q  188 cttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  8439185 cttttctctttatcacttcaacaacttccctcatttccatttccaattctttactccacccatt 8439248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 8417004 - 8417197
Alignment:
Q  20 cagaagccaatgaaccagccaagagaggaacaaatgcagccaaagaactaccattaccaataaatgtagatccaatagctgcaattcctgtgagcaatgg 119  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| |   |||| || |||||||||||||||||||| |||||||||||||| |||||    
T  8417004 cagaagccaatgaaccagccaatagaggaacaaaggcagccaaagagc---cattgcctataaatgtagatccaatagcggcaattcctgtgagtaatgg 8417100  T
Q  120 ccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctctttatcacttcaacaacttcc 216  Q
    |||||||||||| |||||||||| || |||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  8417101 ccctgcaattgctaaactcttgtctaccttcaaagctatgtttccaagcctgttataatcttcagcatcttttctctttatcacttcaacaacttcc 8417197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 8417201 - 8417366
Alignment:
Q  83 atgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttc 182  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8417201 atgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttc 8417300  T
Q  183 aacatcttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatcc 248  Q
    |  |||||||||||| ||||||||| | ||||||  |||||||||||||||||||| |||||||||    
T  8417301 agaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattctttactccatcc 8417366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 206
Target Start/End: Original strand, 8368226 - 8368357
Alignment:
Q  75 accaataaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtca 174  Q
    ||||| |||||| || || | |||||||||||| ||||| ||||| |||||||| |||||  |||| |||||||||||| | | |||||| | ||| |||    
T  8368226 accaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctca 8368325  T
Q  175 taatcttcaacatcttttctctttatcacttc 206  Q
    |||||||| | |||||||||||| || |||||    
T  8368326 taatcttccatatcttttctcttcataacttc 8368357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 8401184 - 8401053
Alignment:
Q  75 accaataaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtca 174  Q
    ||||| |||||| || || | |||||||||||| ||||| ||||| |||||||| |||||  |||| |||||||||||| | | |||||| | ||| |||    
T  8401184 accaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctca 8401085  T
Q  175 taatcttcaacatcttttctctttatcacttc 206  Q
    |||||||| | |||||||||||| || |||||    
T  8401084 taatcttccatatcttttctcttcataacttc 8401053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 8422761 - 8422630
Alignment:
Q  75 accaataaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtca 174  Q
    ||||| |||||| || || | |||||||||||| ||||| ||||| |||||||| |||||  |||| |||||||||||| | | |||||| | ||| |||    
T  8422761 accaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctca 8422662  T
Q  175 taatcttcaacatcttttctctttatcacttc 206  Q
    |||||||| | |||||||||||| || |||||    
T  8422661 taatcttccatatcttttctcttcataacttc 8422630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 8403918 - 8404032
Alignment:
Q  94 atagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttc 193  Q
    ||||||||||||||||| | ||| || |||  |||||| ||||||||||| ||||| || || || || || | ||| |||||||| |||| ||||||||    
T  8403918 atagctgcaattcctgttaacaaaggtcctaaaattgctaaactcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttc 8404017  T
Q  194 tctttatcacttcaa 208  Q
    |||| | ||||||||    
T  8404018 tcttcaccacttcaa 8404032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 55336242 - 55336396
Alignment:
Q  97 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctct 196  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| |||||||| ||||| ||||||||||| ||||| |||||||  ||||| ||||    
T  55336242 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 55336341  T
Q  197 ttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 251  Q
    |||  ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55336342 ttacaacttcaataacttccctcatttccatttctaattcttcactccatccatt 55336396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 55330788 - 55330958
Alignment:
Q  81 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatct 180  Q
    ||||| ||| || |||||||||||||| ||||| ||||| || ||| |||| |||||||| || | ||| || ||||| ||||||||||| |||||||||    
T  55330788 aaatgcagaacctatagctgcaattccagtgagtaatggaccagcagttgctaaactcttattaacctttaatgctatatttccaagtctttcataatct 55330887  T
Q  181 tcaacatcttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 251  Q
    |||| ||||||  | || |  ||||||| |||||| |||| |||| |||||||||| ||||||||||||||    
T  55330888 tcaatatctttcattttcacaacttcaataacttctctcaattccttttctaattcctcactccatccatt 55330958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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