View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18613_low_12 (Length: 250)
Name: NF18613_low_12
Description: NF18613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18613_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 22515266 - 22515487
Alignment:
| Q |
13 |
aatatttcctaatgcccacacagcctgcatacacagaagaaatgtttagttttcatgaaatgatacaatggtgcagttcaactacaatttcatacacac- |
111 |
Q |
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| T |
22515266 |
aatatttcctaatgcccacgcagcctgcatacacagaagaaatgtttagttttcatgaaatgatacaatggtgcagttcaactacaatttcatacacaca |
22515365 |
T |
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| Q |
112 |
-cnnnnnnnttaggacacaatattttaaaggacattaataataatccaagtttcctaaagtttctgcattttaaacgataattgtatgttaagagatgta |
210 |
Q |
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| T |
22515366 |
ccaaaaaaattaggacacaatattttaaaggacattaataataatccaagtttcctaaagtttctgcattttcaacgataattgtatgttaagagatgta |
22515465 |
T |
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| Q |
211 |
caatatacctgttcacggatat |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
22515466 |
caatatacctgttcacggatat |
22515487 |
T |
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