View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18613_low_15 (Length: 222)

Name: NF18613_low_15
Description: NF18613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18613_low_15
NF18613_low_15
[»] chr6 (10 HSPs)
chr6 (14-201)||(24417427-24417614)
chr6 (73-120)||(1459541-1459588)
chr6 (73-174)||(4743845-4743946)
chr6 (73-169)||(4183001-4183097)
chr6 (73-120)||(1470923-1470970)
chr6 (75-120)||(9819831-9819876)
chr6 (73-122)||(19119065-19119114)
chr6 (73-122)||(19126359-19126408)
chr6 (73-113)||(176345-176385)
chr6 (73-121)||(370785-370833)
[»] chr5 (10 HSPs)
chr5 (73-123)||(23766862-23766912)
chr5 (73-123)||(23816710-23816760)
chr5 (69-123)||(20292996-20293050)
chr5 (73-123)||(11081814-11081864)
chr5 (69-123)||(20301444-20301498)
chr5 (69-123)||(20305857-20305911)
chr5 (69-123)||(20310261-20310315)
chr5 (73-123)||(23769646-23769696)
chr5 (73-123)||(23819494-23819544)
chr5 (74-123)||(3181718-3181767)
[»] chr2 (8 HSPs)
chr2 (14-184)||(33020253-33020423)
chr2 (14-179)||(33038105-33038270)
chr2 (72-115)||(34560916-34560959)
chr2 (73-123)||(36577367-36577417)
chr2 (71-179)||(33026602-33026710)
chr2 (73-121)||(7168690-7168738)
chr2 (68-114)||(6538844-6538890)
chr2 (73-123)||(7160754-7160804)
[»] chr3 (45 HSPs)
chr3 (68-132)||(2631349-2631413)
chr3 (70-123)||(2476635-2476688)
chr3 (70-123)||(13498225-13498278)
chr3 (71-123)||(2456250-2456302)
chr3 (72-123)||(1891063-1891114)
chr3 (64-123)||(2644353-2644412)
chr3 (64-123)||(2659143-2659202)
chr3 (64-123)||(4142125-4142184)
chr3 (73-123)||(803218-803268)
chr3 (73-123)||(2442040-2442090)
chr3 (73-123)||(2696732-2696782)
chr3 (73-123)||(3754601-3754651)
chr3 (73-123)||(4157944-4157994)
chr3 (73-123)||(7432054-7432104)
chr3 (73-122)||(2459277-2459326)
chr3 (51-132)||(9561963-9562044)
chr3 (64-121)||(9587176-9587233)
chr3 (71-123)||(771497-771549)
chr3 (51-123)||(7324409-7324481)
chr3 (68-132)||(9608339-9608403)
chr3 (72-132)||(43991952-43992012)
chr3 (73-132)||(768329-768388)
chr3 (46-129)||(2492077-2492160)
chr3 (64-123)||(7334230-7334289)
chr3 (73-123)||(37753345-37753395)
chr3 (70-123)||(754606-754659)
chr3 (66-123)||(7430529-7430586)
chr3 (70-123)||(7942486-7942539)
chr3 (73-122)||(23197014-23197063)
chr3 (51-123)||(956382-956454)
chr3 (71-123)||(1437997-1438048)
chr3 (72-132)||(7442976-7443036)
chr3 (65-121)||(14888604-14888660)
chr3 (64-123)||(2502149-2502208)
chr3 (64-123)||(2678390-2678449)
chr3 (73-132)||(9594624-9594683)
chr3 (73-123)||(989397-989447)
chr3 (68-118)||(37757731-37757781)
chr3 (64-114)||(44001605-44001655)
chr3 (77-122)||(997578-997623)
chr3 (77-122)||(1013968-1014013)
chr3 (70-123)||(9565826-9565879)
chr3 (73-122)||(23230982-23231031)
chr3 (75-123)||(968672-968720)
chr3 (68-138)||(2635710-2635777)
[»] chr1 (12 HSPs)
chr1 (64-120)||(51381446-51381502)
chr1 (73-123)||(51854948-51854998)
chr1 (73-120)||(51832377-51832424)
chr1 (73-123)||(51858607-51858657)
chr1 (75-123)||(51782800-51782848)
chr1 (73-123)||(51756750-51756800)
chr1 (82-123)||(24246506-24246547)
chr1 (74-123)||(24513057-24513106)
chr1 (74-123)||(25478866-25478915)
chr1 (74-123)||(51829778-51829827)
chr1 (83-123)||(23896147-23896187)
chr1 (75-123)||(24629213-24629261)
[»] scaffold0044 (1 HSPs)
scaffold0044 (70-120)||(89147-89197)
[»] scaffold0015 (1 HSPs)
scaffold0015 (74-123)||(32330-32379)
[»] chr4 (1 HSPs)
chr4 (73-121)||(22672127-22672175)
[»] scaffold1004 (1 HSPs)
scaffold1004 (76-179)||(2088-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (76-179)||(4583-4686)
[»] chr7 (2 HSPs)
chr7 (74-123)||(1421170-1421219)
chr7 (68-132)||(39298969-39299033)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 24417427 - 24417614
Alignment:
Q  14 aatatataaagcctttgtataaagacgtattacccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24417427 aatatataaagcctttgtataaagacgtattacccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcata 24417526  T
Q  114 atccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaacccacaaacttgtgaaacaatcatcctcca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24417527 atccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaacccccaaacttgtgaaacaatcatcctcca 24417614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 1459541 - 1459588
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaa 120  Q
    ||||||||||||||||||||||||||||| | |||||||||| |||||    
T  1459541 acaatttagtccaagattctttatttccaaaatctttcataacccaaa 1459588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 4743845 - 4743946
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaac 172  Q
    |||||||||||||||||| |  |||||||||||| ||||| ||||||||||  ||||||  |||||   | | ||  |||||||||||||||||||| ||    
T  4743845 acaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattagaaaaaatgcacaaacaatccctcaacac 4743944  T
Q  173 cc 174  Q
    ||    
T  4743945 cc 4743946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 4183001 - 4183097
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaa 169  Q
    |||||||||||||||||| |  |||||||||||| ||||| ||||||||||  ||||||  |||||   | | ||  ||||||||||||||||||||    
T  4183001 acaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattagaaaaaatgcacaaacaatccctcaa 4183097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 1470923 - 1470970
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaa 120  Q
    ||||||||| |||||| |||||||||||||| |||||||||| |||||    
T  1470923 acaatttagaccaagaatctttatttccataatctttcataacccaaa 1470970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 9819831 - 9819876
Alignment:
Q  75 aatttagtccaagattctttatttccatattctttcataatccaaa 120  Q
    |||||||||||||| ||| ||||||||||||| ||||||| |||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 19119114 - 19119065
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaaca 122  Q
    |||||||||||||||| |||| |||||||||||| ||||| | |||||||    
T  19119114 acaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 19126408 - 19126359
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaaca 122  Q
    |||||||||||||||| |||| |||||||||||| ||||| | |||||||    
T  19126408 acaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 176385 - 176345
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcata 113  Q
    |||||||||||||||| |||||||||||||| || ||||||    
T  176385 acaatttagtccaagaatctttatttccataatcattcata 176345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 370785 - 370833
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaac 121  Q
    |||||||||||||||| |||||||||||||| |  ||||||| ||||||    
T  370785 acaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 23766862 - 23766912
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23766862 acaatttagtccaagactctttatttccatattctttcataatccaaacat 23766912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 23816710 - 23816760
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23816710 acaatttagtccaagactctttatttccatattctttcataatccaaacat 23816760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 20293050 - 20292996
Alignment:
Q  69 ctgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  20293050 ctgtataatttagtccaagactctttaattccatattccttcataatccaaacat 20292996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 11081864 - 11081814
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||| |||||||||||||| || ||||||| ||||||||    
T  11081864 acaatttagtccaagactctttatttccatactccttcataacccaaacat 11081814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 20301498 - 20301444
Alignment:
Q  69 ctgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||| |||||||||||||| |||||| || ||||||| ||||||||||||||||    
T  20301498 ctgtataatttagtccaagactctttaattgcatattccttcataatccaaacat 20301444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 20305911 - 20305857
Alignment:
Q  69 ctgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  20305911 ctgtataatttagtccaagactctttaattccatattccttcataatccagacat 20305857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 20310315 - 20310261
Alignment:
Q  69 ctgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  20310315 ctgtataatttagtccaagactctttaattccatattccttcataatccagacat 20310261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 23769646 - 23769696
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||||||||  ||||||| |||||||| ||||||||||||||||    
T  23769646 acaatttagtccaagacgctttattcccatattccttcataatccaaacat 23769696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 23819494 - 23819544
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||||||||  ||||||| |||||||| ||||||||||||||||    
T  23819494 acaatttagtccaagacgctttattcccatattccttcataatccaaacat 23819544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 3181767 - 3181718
Alignment:
Q  74 caatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||| ||||||| |||| |||||||||||| ||||||| ||||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacat 3181718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 33020423 - 33020253
Alignment:
Q  14 aatatataaagcctttgtataaagacgtattacccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcata 113  Q
    |||||||||||||||||||||  |||  |   |||| |||| |||||   ||| || ||||||| |||||||||| | ||||||||||||||| ||||||    
T  33020423 aatatataaagcctttgtatagtgacacaaaccccgatcttccatgtaaggaacacggtacaatctagtccaagactttttatttccatattccttcata 33020324  T
Q  114 atccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaacccacaaacttgt 184  Q
    ||||| ||||| |||||||  ||||   ||| || || |||||| |||||||||||||||| |||| ||||    
T  33020323 atccacacattaaaaaacatatcactatttgcaaagaagcacaagcaatccctcaaaacccccaaatttgt 33020253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 33038270 - 33038105
Alignment:
Q  14 aatatataaagcctttgtataaagacgtattacccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcata 113  Q
    |||||||||||||||||||||  |||  |   |||| |||| |||||   ||| || ||||||| |||||||||| | ||| ||||||||||| ||||||    
T  33038270 aatatataaagcctttgtatagcgacacaaaccccgatcttccatgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcata 33038171  T
Q  114 atccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaacccacaaa 179  Q
    ||||||||||  |||||||  ||||   ||| || ||||||||| |||||||||||||||| ||||    
T  33038170 atccaaacatcaaaaaacatatcactacttgcaaagatgcacaagcaatccctcaaaacccccaaa 33038105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 34560916 - 34560959
Alignment:
Q  72 tacaatttagtccaagattctttatttccatattctttcataat 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  34560916 tacaatttagtccaagattttttatttccatattctttcataat 34560959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 36577417 - 36577367
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  36577417 acaatttaatccaagactctttatttccatattccttcataatccaaacat 36577367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 33026710 - 33026602
Alignment:
Q  71 gtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaa 170  Q
    ||||||| |||||||||| | ||||||||||||||  ||||||| ||||||||  |||||||  |||    ||  || ||||||||| ||||||||||||    
T  33026710 gtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcacaagcaatccctcaaa 33026611  T
Q  171 acccacaaa 179  Q
    |||||||||    
T  33026610 acccacaaa 33026602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 7168690 - 7168738
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaac 121  Q
    |||||||||||||||| || |||||||||||||| ||||||| ||||||    
T  7168690 acaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 6538890 - 6538844
Alignment:
Q  68 actgtacaatttagtccaagattctttatttccatattctttcataa 114  Q
    |||| |||||||||||||||| |||||||||||||| || |||||||    
T  6538890 actgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 7160754 - 7160804
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||| || ||||||||||| || ||||||| ||||||||    
T  7160754 acaatttagtccaagaatcattatttccatactccttcataagccaaacat 7160804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 2631413 - 2631349
Alignment:
Q  68 actgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 132  Q
    |||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||    
T  2631413 actgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaaca 2631349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 2476688 - 2476635
Alignment:
Q  70 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||||||||||| |||||||||||||| | |||||||||||||||||    
T  2476688 tgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacat 2476635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 13498278 - 13498225
Alignment:
Q  70 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  13498278 tgtataatttagtccaagactctttatttccatattccttcataatccaaacat 13498225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 2456302 - 2456250
Alignment:
Q  71 gtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  2456302 gtacaatttagtccaagagtctttatttccatattccttcataacccaaacat 2456250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 1891063 - 1891114
Alignment:
Q  72 tacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  1891063 tacaatttagtccaagagtctttatttccatgttccttcataatccaaacat 1891114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 2644353 - 2644412
Alignment:
Q  64 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||| ||||||||||||||||||| |||| ||||||||| || ||||||||||||||||    
T  2644353 gaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacat 2644412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 2659143 - 2659202
Alignment:
Q  64 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||| ||||||||||||||||||| |||| ||||||||| || ||||||||||||||||    
T  2659143 gaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacat 2659202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 4142125 - 4142184
Alignment:
Q  64 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||| || |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  4142125 gaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacat 4142184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 803218 - 803268
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  803218 acaacttagtccaagactctttatttccatattctttcataacccaaacat 803268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 2442090 - 2442040
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  2442090 acaatttagtccaagaatctttatttccatactccttcataatccaaacat 2442040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 2696732 - 2696782
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  2696732 acaatttaatccaagactctttatttccatattccttcataatccaaacat 2696782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 3754651 - 3754601
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  3754651 acaatttagtccaagactctttatttccatattccttcataacccaaacat 3754601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 4157944 - 4157994
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  4157944 acaatttagtccaagactctttatttccatattccttcataagccaaacat 4157994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 7432054 - 7432104
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  7432054 acaatttagtccacgattctttatttccatattccttcatactccaaacat 7432104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 2459326 - 2459277
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaaca 122  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  2459326 acaattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 9561963 - 9562044
Alignment:
Q  51 tcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 132  Q
    ||||||||||   ||| |||||| |||||||||||||| |||| ||||||||| || ||||||||||||||||  |||||||    
T  9561963 tcttgcatgttaggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaaaaaca 9562044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 9587176 - 9587233
Alignment:
Q  64 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaac 121  Q
    ||||| |||||||||| |||||||  ||||||||||||||||| ||||||||||||||    
T  9587176 gaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 771497 - 771549
Alignment:
Q  71 gtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||    
T  771497 gtacaatttagtccaagagtctgtatttccatattccttcataacccaaacat 771549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 7324409 - 7324481
Alignment:
Q  51 tcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||   ||| ||| ||||||||||||||||| ||||||||||| || || ||||||||||||||||    
T  7324409 tcttgcatgttaggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacat 7324481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 9608339 - 9608403
Alignment:
Q  68 actgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 132  Q
    |||||| |||||||||||||| ||| ||||||||||||| ||||||| ||||||||  |||||||    
T  9608339 actgtataatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaaca 9608403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 43992012 - 43991952
Alignment:
Q  72 tacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 132  Q
    |||||||| |||||||| ||| ||||||||||||| ||||||||||||||||  |||||||    
T  43992012 tacaatttggtccaagactctatatttccatattccttcataatccaaacatccaaaaaca 43991952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 768329 - 768388
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 132  Q
    |||||||||||||||| |||| |||||| || || ||||||||||||||||| |||||||    
T  768329 acaatttagtccaagactcttcatttccgtactcattcataatccaaacattaaaaaaca 768388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 2492160 - 2492077
Alignment:
Q  46 cccggtcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaa 129  Q
    |||| ||||||||||   ||| ||| ||||||||||||||||| |||  ||||||||| || ||||||||||||||||| ||||    
T  2492160 cccgatcttgcatgttaggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacattcaaaa 2492077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 7334230 - 7334289
Alignment:
Q  64 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||| ||||||||||||||||||| ||||||||||| || || ||||| ||||||||||    
T  7334230 gaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacat 7334289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 37753345 - 37753395
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||| ||||| ||||||||||| | ||||||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacat 37753395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 754606 - 754659
Alignment:
Q  70 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||||||||||| |||| || |||||| || ||||||||||||||||    
T  754606 tgtacaatttagtccaagactcttgatctccatactccttcataatccaaacat 754659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 7430529 - 7430586
Alignment:
Q  66 atactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||||| |||| | |||||||||||| |  ||||||||||||||||    
T  7430529 atactgtacaatttagtctaagactttttatttccatacttcttcataatccaaacat 7430586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 7942539 - 7942486
Alignment:
Q  70 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||| ||||||| |||||||| ||||| || ||||||||||||||||    
T  7942539 tgtacaatttaatccaagactctttattaccatactccttcataatccaaacat 7942486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 23197063 - 23197014
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaaca 122  Q
    ||||||||||||||||||||| |||||||||||| ||||| | |||||||    
T  23197063 acaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 956454 - 956382
Alignment:
Q  51 tcttgcatgtgtagaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||   |||| || ||||||||  |||||| ||||| ||||||||||| ||||||||||||||||    
T  956454 tcttgcatgtgagaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacat 956382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 1438048 - 1437997
Alignment:
Q  71 gtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||    
T  1438048 gtacaatttaatccaagagtctttatttccatattccttcataa-ccaaacat 1437997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 7442976 - 7443036
Alignment:
Q  72 tacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 132  Q
    ||||| ||||||||||| |||| ||||||||| || ||||| ||||||||||| |||||||    
T  7442976 tacaacttagtccaagactcttgatttccatactccttcatgatccaaacattaaaaaaca 7443036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 14888604 - 14888660
Alignment:
Q  65 aatactgtacaatttagtccaagattctttatttccatattctttcataatccaaac 121  Q
    |||| |||||||||||||| |||  ||||||||| ||||||| ||||||||||||||    
T  14888604 aatattgtacaatttagtctaaggctctttattttcatattcattcataatccaaac 14888660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 2502208 - 2502149
Alignment:
Q  64 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||| |||||| |||||||||| | || ||||||||||| || ||||||||||||||||    
T  2502208 gaatagtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacat 2502149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 2678390 - 2678449
Alignment:
Q  64 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||| || ||||||||||||| || ||||| |||||||||| |||||||| ||||||||    
T  2678390 gaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacat 2678449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 9594624 - 9594683
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 132  Q
    |||||||||||||||| |||| |||||| || |  ||||||||||||||||| |||||||    
T  9594624 acaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaaca 9594683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 989447 - 989397
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||| ||||||||||| || |||||||| | ||||||||    
T  989447 acaatttagtccaagactctttatttccgtactctttcattacccaaacat 989397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 37757731 - 37757781
Alignment:
Q  68 actgtacaatttagtccaagattctttatttccatattctttcataatcca 118  Q
    ||||||||| || |||||||| ||||| ||||||||||| |||||||||||    
T  37757731 actgtacaacttcgtccaagactctttgtttccatattccttcataatcca 37757781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 44001655 - 44001605
Alignment:
Q  64 gaatactgtacaatttagtccaagattctttatttccatattctttcataa 114  Q
    ||||| |||||| |||||||||||| |||||| |||||||||| |||||||    
T  44001655 gaatagtgtacagtttagtccaagactctttaattccatattccttcataa 44001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 997623 - 997578
Alignment:
Q  77 tttagtccaagattctttatttccatattctttcataatccaaaca 122  Q
    |||||||||||| ||||||||||||||||| ||||| | |||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 1014013 - 1013968
Alignment:
Q  77 tttagtccaagattctttatttccatattctttcataatccaaaca 122  Q
    |||||||||||| ||||||||||||||||| ||||| | |||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 9565826 - 9565879
Alignment:
Q  70 tgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||||||||||| |||| || ||| || || ||||||||||||||||    
T  9565826 tgtacaatttagtccaagactcttgatctccgtactccttcataatccaaacat 9565879  T

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Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 23230982 - 23231031
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaaca 122  Q
    |||||||| ||||||| |||| |||||||||||||||||| | |||||||    
T  23230982 acaatttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

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Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 968720 - 968672
Alignment:
Q  75 aatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||| || ||||||||||||| ||| ||||||| ||||||||    
T  968720 aatttagtccatgactctttatttccatgttccttcataacccaaacat 968672  T

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Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 2635777 - 2635710
Alignment:
Q  68 actgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcac 138  Q
    ||||||||||||||||||||| |||| | ||||||| ||   ||||||||||||||  |||||||| ||||    
T  2635777 actgtacaatttagtccaagactcttcacttccatactc---cataatccaaacatccaaaaacacatcac 2635710  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 51381446 - 51381502
Alignment:
Q  64 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaa 120  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||    
T  51381446 gaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaa 51381502  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 51854998 - 51854948
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  51854998 acaatttagtccaagattctacatttccatattctttcatgatccaaacat 51854948  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 51832424 - 51832377
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaa 120  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||    
T  51832424 acaatttagtccaagattgttcatttccatattctttcattatccaaa 51832377  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 51858657 - 51858607
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||||||||||||||||  |||||||||||| ||||| ||||||||||    
T  51858657 acaatttagtccaagattctacatttccatattccttcatgatccaaacat 51858607  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 51782848 - 51782800
Alignment:
Q  75 aatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||| ||||||||| || |||||||||||| ||||||||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacat 51782800  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 51756750 - 51756800
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||||||||||||||| |  |||||||||||| ||||| ||||||||||    
T  51756750 acaatttagtccaagattgtccatttccatattccttcatgatccaaacat 51756800  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 24246506 - 24246547
Alignment:
Q  82 tccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||    
T  24246506 tccaagactctttatttccgtattctttcataagccaaacat 24246547  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 24513106 - 24513057
Alignment:
Q  74 caatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||| |||| || |||||| |||||||||||||||||| ||||||||    
T  24513106 caatttaatccatgactctttacttccatattctttcataagccaaacat 24513057  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 25478915 - 25478866
Alignment:
Q  74 caatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||| |||||||||||||||| || ||||| ||||||| ||||||||    
T  25478915 caatttaatccaagattctttattaccgtattccttcataagccaaacat 25478866  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 51829827 - 51829778
Alignment:
Q  74 caatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||| |||||||||  | |||||||||||||||||| ||||||||||    
T  51829827 caatttaatccaagattggtcatttccatattctttcattatccaaacat 51829778  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 23896147 - 23896187
Alignment:
Q  83 ccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||| ||||||||||||||||| ||||||| ||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaacat 23896187  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 24629213 - 24629261
Alignment:
Q  75 aatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    |||||| ||||||| ||||||||||| ||||| ||||||| ||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacat 24629261  T

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Target: scaffold0044 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 89197 - 89147
Alignment:
Q  70 tgtacaatttagtccaagattctttatttccatattctttcataatccaaa 120  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  89197 tgtacaatttagtccaagactctttatttccatattccttcataacccaaa 89147  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 32330 - 32379
Alignment:
Q  74 caatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaacat 32379  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 22672127 - 22672175
Alignment:
Q  73 acaatttagtccaagattctttatttccatattctttcataatccaaac 121  Q
    ||||||||||||||||||| |||||||||||||| ||||| | ||||||    
T  22672127 acaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

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Target: scaffold1004 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 2191 - 2088
Alignment:
Q  76 atttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaaccca 175  Q
    ||||||||||||| |||  |||||||||||| ||||||  ||||||||| |||||||| |||    ||| || ||||||||| |||||| | |||||||     
T  2191 atttagtccaagactctacatttccatattccttcatagcccaaacattcaaaaacacatcattacttgcaaagatgcacaagcaatcctttaaaacccc 2092  T
Q  176 caaa 179  Q
    ||||    
T  2091 caaa 2088  T

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Target: scaffold0760 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 4686 - 4583
Alignment:
Q  76 atttagtccaagattctttatttccatattctttcataatccaaacatttaaaaacacgtcaccggttgtaatgatgcacaaacaatccctcaaaaccca 175  Q
    ||||||||||||| |||  |||||||||||| ||||||  ||||||||| |||||||| |||    ||| || ||||||||| |||||| | |||||||     
T  4686 atttagtccaagactctacatttccatattccttcatagcccaaacattcaaaaacacatcattacttgcaaagatgcacaagcaatcctttaaaacccc 4587  T
Q  176 caaa 179  Q
    ||||    
T  4586 caaa 4583  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 1421170 - 1421219
Alignment:
Q  74 caatttagtccaagattctttatttccatattctttcataatccaaacat 123  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||| ||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcataagccaaacat 1421219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 39299033 - 39298969
Alignment:
Q  68 actgtacaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 132  Q
    |||||| ||||||||||| || |||||||||||| |||| |||| || ||||||||  |||||||    
T  39299033 actgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaacatcaaaaaaca 39298969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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