View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18613_low_2 (Length: 499)
Name: NF18613_low_2
Description: NF18613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18613_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 165 - 488
Target Start/End: Original strand, 40286789 - 40287112
Alignment:
| Q |
165 |
aggtagataagtgtgttatctagctggtgcttagttggaaagtaaagccatgtcaggaacaaaattggcttattatgggtgatgtatgtatgaatgagtg |
264 |
Q |
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| T |
40286789 |
aggtagataagtgtgttatctagctggtgcttagttggaaagtaaagccatgtcaggaacaaaattggcttattatgggtgatgtatgtatgaatgagtg |
40286888 |
T |
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| Q |
265 |
gtgaacatttgctcttggaaggtaactatctatccaatcatcatcatcatgctaatgcacattttcaatgcacatatgtgcaattaccttttttcaaaga |
364 |
Q |
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| T |
40286889 |
gtgaacatttgctcttggaaggtaactatctatccaatcatcatcatcatgctaatgcacattttcaatgcacatatgtgcaattaccttttttcaaaga |
40286988 |
T |
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| Q |
365 |
tatagattaagaaaattaatttacgaacaaataaatgtaacaattttataaagtcatctttaataggtattgactattaataattctaatattctacaac |
464 |
Q |
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| T |
40286989 |
tatagattaagaaaattaatttatgaacaaataaatgtaacaattttataaagtcatctttaatagctattgactattaataattctaatattctacaac |
40287088 |
T |
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| Q |
465 |
tagtgaggttcctttcatattcat |
488 |
Q |
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| T |
40287089 |
tagtgaggttcctttcatattcat |
40287112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 40286636 - 40286763
Alignment:
| Q |
18 |
gttagtgcttgtagagaatttgaaagagggttgaaaggtaagagaggtggctgaaagagaggccattgtattgaatcttaggaagaagatagaatagtaa |
117 |
Q |
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| T |
40286636 |
gttagtgcttgtagagaatttgaaagagggttgaaaggtaagagaggtggctgaaagagaggccattgtattgaagcttaggaagaagatagaatagtaa |
40286735 |
T |
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| Q |
118 |
gagatatggattgggttgatgaaacggt |
145 |
Q |
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| T |
40286736 |
gagatatggattgggttgatgaaacggt |
40286763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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