View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18613_low_3 (Length: 484)
Name: NF18613_low_3
Description: NF18613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18613_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 119 - 323
Target Start/End: Complemental strand, 40287461 - 40287257
Alignment:
| Q |
119 |
gaagggtggaagtgagtaacatttgacataatcaaacaacattttaaaatattcataatctcatggacacgttttggagttagaaacaattttgatatgt |
218 |
Q |
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| T |
40287461 |
gaagggtggaagtgagtaacatttgacataatcaaacaacattttaaaatattcataatctcatggacacgttttggagttagaaacaattttgata--t |
40287364 |
T |
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| Q |
219 |
gttatttactgattaatttatcgttaaattaatattgtgttcattacttttaagtcattatatcacacttttgtc--aaaaacaaaaagtcattatatca |
316 |
Q |
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| T |
40287363 |
gttatttactgattaaattatcattaaattaatattgtgttcattacttttaagtcattatatcacacttttgtcaaaaaaaaaaaaagtcattatatca |
40287264 |
T |
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| Q |
317 |
cactata |
323 |
Q |
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| T |
40287263 |
cactata |
40287257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 405 - 484
Target Start/End: Complemental strand, 40287172 - 40287093
Alignment:
| Q |
405 |
tttttaggcatacaagcctaaaaaatgttataaaaagggtattagaagtgtctcaatgaaatgaatatgaaaggaacctc |
484 |
Q |
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| T |
40287172 |
tttttaggcatacaagccaaaaaaatgttataaaaagggtattagaagtgtctccatgaaatgaatatgaaaggaacctc |
40287093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 3914818 - 3914874
Alignment:
| Q |
125 |
tggaagtgagtaacatttgacataatcaaacaacattttaaaatattcataatctca |
181 |
Q |
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| T |
3914818 |
tggaattgagtaacatttgacagaatcgaagaccaatttgaaatattcataatctca |
3914874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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