View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18613_low_8 (Length: 277)

Name: NF18613_low_8
Description: NF18613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18613_low_8
NF18613_low_8
[»] chr7 (4 HSPs)
chr7 (17-266)||(38735677-38735926)
chr7 (27-100)||(8170197-8170270)
chr7 (27-78)||(9417139-9417190)
chr7 (27-99)||(29407675-29407747)
[»] chr5 (3 HSPs)
chr5 (27-99)||(4381779-4381851)
chr5 (27-99)||(38734607-38734679)
chr5 (27-99)||(41982444-41982516)
[»] chr3 (4 HSPs)
chr3 (27-99)||(54449762-54449834)
chr3 (26-99)||(19594485-19594558)
chr3 (27-99)||(25750926-25750998)
chr3 (27-87)||(30442370-30442430)
[»] chr2 (2 HSPs)
chr2 (27-99)||(6407993-6408065)
chr2 (30-99)||(6407870-6407939)
[»] chr8 (2 HSPs)
chr8 (27-99)||(39141944-39142016)
chr8 (27-98)||(6924236-6924308)
[»] chr1 (6 HSPs)
chr1 (27-99)||(8245357-8245429)
chr1 (27-99)||(23391977-23392049)
chr1 (30-99)||(8245483-8245552)
chr1 (30-99)||(42106964-42107033)
chr1 (27-99)||(42107089-42107161)
chr1 (39-96)||(23391867-23391924)
[»] scaffold1786 (2 HSPs)
scaffold1786 (27-99)||(1133-1205)
scaffold1786 (39-96)||(1260-1317)
[»] chr6 (1 HSPs)
chr6 (32-99)||(23126766-23126833)
[»] scaffold1609 (1 HSPs)
scaffold1609 (39-96)||(8-65)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 38735926 - 38735677
Alignment:
Q  17 atcaatatcatttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctcgatgtgtctacacatga 116  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||    
T  38735926 atcaacatcatttaatttttgcatttgatatgagtgtatctaaatattgataatttgtggctgtgtctatataaaagtttctcgctgtgtctacacatga 38735827  T
Q  117 tatacttcataatatgaatttgtaacagtgttgacaaaaaatttcttgtatttttaacctctcttgctcttccagctaaataatctcttgtgcttcacta 216  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38735826 tatacttcataatatgaatttgtaacagtgttgacaaattttttcttgtgtttttaacctctcttgctcttccagctaaataatctcttgtgcttcacta 38735727  T
Q  217 caaattctagagcatggtccccataattcatatatcactaccatggcaca 266  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38735726 caagttctagagcatggtccccataattcatatatcactaccatggcaca 38735677  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 8170270 - 8170197
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctcg 100  Q
    ||||||||||  ||||||||||||| |||||||||||| || ||||||| || |||||||| |||| |||||||    
T  8170270 tttaatttttatatttgatgtgagtatatctaaatatttatcatttgtgattgtgtctatagaagactttctcg 8170197  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 9417190 - 9417139
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggtt 78  Q
    ||||||||| |||||||||||| |||| | |||||||| |||||||||||||    
T  9417190 tttaattttggcatttgatgtgggtgtgtttaaatatttataatttgtggtt 9417139  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 29407747 - 29407675
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||||||||  ||||||||||| ||| |  ||||||| || |||||||||| | |||||| |||||||||||    
T  29407747 tttaatttttctatttgatgtgaatgtgttcaaatatttatcatttgtggttgtatctatagaagagtttctc 29407675  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 4381779 - 4381851
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    |||||||||||||||||||||||||||||||||||||| || |||||| ||| || ||||| || ||||||||    
T  4381779 tttaatttttgcatttgatgtgagtgtatctaaatatttatcatttgtagttgtgcctataaaatagtttctc 4381851  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 38734679 - 38734607
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||||||||||||||||||||||||| |||||||||| || |||| | ||| ||| |||| |||||||||||    
T  38734679 tttaatttttgcatttgatgtgagtgtgtctaaatatttatcatttatagttgtgtttatagaagagtttctc 38734607  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 41982516 - 41982444
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    |||||||| | ||||| |||||||||| |||||||||| || ||||||  || | |||||| |||||||||||    
T  41982516 tttaatttatacatttaatgtgagtgtgtctaaatatttatcatttgtatttgtatctataaaagagtttctc 41982444  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 54449834 - 54449762
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    |||||||||||||||| |||||| ||| |||||||||| || |||| ||||| |||||||| |||||||||||    
T  54449834 tttaatttttgcatttaatgtgaatgtgtctaaatatttatcatttatggttgtgtctatagaagagtttctc 54449762  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 19594558 - 19594485
Alignment:
Q  26 atttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||||||||| || ||||| |||||||||||||||||| || ||||||| || |||  |||||||||||||||    
T  19594558 atttaattttttcaattgatatgagtgtatctaaatatttatcatttgtgattgtgttcatataagagtttctc 19594485  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 25750926 - 25750998
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||||||||||||||| ||||| |||   |||||||| || ||||||| || |||||||| |||| ||||||    
T  25750926 tttaatttttgcatttggtgtgaatgtgcttaaatatttatcatttgtgattgtgtctatacaagattttctc 25750998  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 30442370 - 30442430
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctata 87  Q
    |||||||||| || ||||||||||||   ||||||||| || |||||||||| ||||||||    
T  30442370 tttaatttttacaattgatgtgagtgcggctaaatatttatcatttgtggttgtgtctata 30442430  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 6407993 - 6408065
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||||||||||||||||||| ||||| |||||||||| || ||||||  |||||| |||| |||||||||||    
T  6407993 tttaatttttgcatttgatgtaagtgtgtctaaatatttatcatttgtaattatgtttataaaagagtttctc 6408065  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 6407939 - 6407870
Alignment:
Q  30 aatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||||| |||||||||||| ||| |||||||||| || |||| | ||| |||| ||| |||||||||||    
T  6407939 aatttttccatttgatgtgaatgtttctaaatatttatcatttatagttgtgtccatagaagagtttctc 6407870  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 39141944 - 39142016
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||||||||||||||||||||| | | | |||||||| || |||||| || ||||||||| |||||||||||    
T  39141944 tttaatttttgcatttgatgtgaatatgtttaaatatttatcatttgtagtcatgtctatagaagagtttctc 39142016  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 6924236 - 6924308
Alignment:
Q  27 tttaatttttgc-atttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttct 98  Q
    |||||||||| | |||||||||||||||  | ||||||| ||| ||||||||| | | |||||||||||||||    
T  6924236 tttaattttttctatttgatgtgagtgtgcccaaatatttatactttgtggttgtatttatataagagtttct 6924308  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 8245429 - 8245357
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    |||||||||||||||||||||||||||  ||||||||| || ||||||  || ||| |||| |||||||||||    
T  8245429 tttaatttttgcatttgatgtgagtgtgcctaaatatttatcatttgtaattgtgtttatagaagagtttctc 8245357  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 23391977 - 23392049
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    |||| |||||||||||||||||||||| |||||||| | || |||| || || |||||||| |||||||||||    
T  23391977 tttagtttttgcatttgatgtgagtgtgtctaaatagttatcatttatgattgtgtctatagaagagtttctc 23392049  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 8245483 - 8245552
Alignment:
Q  30 aatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||||| |||||||||||||||| |||||||||| || |||| | ||| |||| ||| |||||||||||    
T  8245483 aatttttccatttgatgtgagtgtttctaaatatttatcatttatagttgtgtccatagaagagtttctc 8245552  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 42107033 - 42106964
Alignment:
Q  30 aatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||||| |||||||||||||||| || ||||||| || ||||||||||  ||| ||| |||||||||||    
T  42107033 aatttttccatttgatgtgagtgtgtccaaatatttatcatttgtggttgagtccatagaagagtttctc 42106964  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 42107089 - 42107161
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||||||||||||||||| ||||||| | |||||||| || |||||| ||| ||| || | |||||||||||    
T  42107089 tttaatttttgcatttgatatgagtgtgtgtaaatatttatcatttgtagttgtgtttaaagaagagtttctc 42107161  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 23391924 - 23391867
Alignment:
Q  39 atttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagttt 96  Q
    |||||||||||||||  | ||||||| || |||||||||| |||| ||||||||||||    
T  23391924 atttgatgtgagtgtccccaaatatttatcatttgtggttgtgtccatataagagttt 23391867  T

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Target: scaffold1786 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 1205 - 1133
Alignment:
Q  27 tttaatttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    |||| |||||||||||||| ||||||| |||||||| | || |||| || || |||||||| |||||||||||    
T  1205 tttagtttttgcatttgatatgagtgtgtctaaatagttatcatttatgattgtgtctatagaagagtttctc 1133  T

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Target: scaffold1786; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 1260 - 1317
Alignment:
Q  39 atttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagttt 96  Q
    |||||||||||||||  | ||||||| || |||||||||| |||| ||||||||||||    
T  1260 atttgatgtgagtgtccccaaatatttatcatttgtggttgtgtccatataagagttt 1317  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 23126833 - 23126766
Alignment:
Q  32 tttttgcatttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagtttctc 99  Q
    ||||| ||||| ||||||||||  ||||||||| || ||||||| || |||||||| |||||||||||    
T  23126833 tttttccattttatgtgagtgtgcctaaatatttatcatttgtgattgtgtctatagaagagtttctc 23126766  T

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Target: scaffold1609 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 8 - 65
Alignment:
Q  39 atttgatgtgagtgtatctaaatattgataatttgtggttatgtctatataagagttt 96  Q
    |||||||||||||||  | ||||||| || |||||||||| |||| ||||||||||||    
T  8 atttgatgtgagtgtccccaaatatttatcatttgtggttgtgtccatataagagttt 65  T

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